The test are run each time you file a pull request on github. You can run the test locally as well using the following commands:
# load prerequisites
library(tibble)
# run all tests
devtools::test()
#> ✔ | F W S OK | Context
#>
⠏ | 0 | ArmadilloConnection
⠴ | 126 | ArmadilloConnection
✔ | 191 | ArmadilloConnection
#>
⠏ | 0 | ArmadilloDriver
✔ | 68 | ArmadilloDriver
#>
⠏ | 0 | ArmadilloOAuth
✔ | 11 | ArmadilloOAuth
#>
⠏ | 0 | ArmadilloResult
✔ | 34 | ArmadilloResult
#>
⠏ | 0 | utils
✔ | 1 28 | utils
#>
#> ══ Results ═══════════════════════════════════════════════════════════════════════════════════════════════════════════════
#> ── Skipped tests (1) ─────────────────────────────────────────────────────────────────────────────────────────────────────
#> • I still don't get the .deparse arguments (1): 'test-utils.R:87:3'
#>
#> [ FAIL 0 | WARN 0 | SKIP 1 | PASS 332 ]
#>
#> 🐝 Your tests are the bee's knees 🐝We use vignettes to expose the usage of the package. It includes examples of regular use cases and shows you how to setup the package.
The vignettes are automatically build and you can run them locally with the following command:
If you only want the R-output use:
Some tips and tricks when you developing on DSMolgenisArmadillo
You can login with basic auth when you are developing. The default credentials are username: admin and password: admin.
library(DSMolgenisArmadillo)
armadillo_url <- "https://armadillo-demo.molgenis.net"
builder <- DSI::newDSLoginBuilder()
builder$append(
server = "armadillo",
url = armadillo_url,
user = "admin",
password = "tuloo5saiwaeyooS",
driver = "ArmadilloDriver",
table = "gecko/2_1-core-1_0/nonrep",
profile = "xenon",
)
login_data <- builder$build()
conns <- DSI::datashield.login(logins = login_data, assign = TRUE)You can determine which version of the DSMolgenisArmadillo you are running by executing the following code:
You can use several methods checking if tables in DataSHIELD. For checking existence of the tables you can use the following methods.
dsHasTable(conns$armadillo, "gecko/2_1-core-1_0/nonrep")
#> [1] TRUE
dsHasTable(conns$armadillo, "gecko/1_1-outcome-1_0/nonrep")
#> [1] TRUETo check the accessibility you can use the table_status
methods.
datashield.table_status(conns, "gecko/2_1-core-1_0/nonrep")
#> server table accessible
#> 1 armadillo gecko/2_1-core-1_0/nonrep TRUETo check which tables are assigned you can use the
dsListTables function.
dsListTables(conns$armadillo)
#> [1] "study1/2_1-core-1_0/nonrep" "study1/2_1-core-1_0/yearlyrep"
#> [3] "study1/1_1-outcome-1_0/yearlyrep" "gecko/2_1-core-1_0/trimesterrep"
#> [5] "gecko/2_1-core-1_0/nonrep" "gecko/2_1-core-1_0/yearlyrep"
#> [7] "gecko/2_1-core-1_0/monthlyrep" "gecko/1_1-outcome-1_0/nonrep"
#> [9] "gecko/1_1-outcome-1_0/yearlyrep" "test/data/LT-example-dataset_long-format"
#> [11] "test/data/d" "trajectories/data/alspac"
#> [13] "trajectories/data/chs" "trajectories/data/bib"
#> [15] "trajectories/data/bcg" "trajectories/data/d"
#> [17] "trajectories/data/probit" "inma/1_2_urban_ath_1_0/yearly_rep"
#> [19] "inma/1_2_urban_ath_1_0/trimester_rep" "inma/1_2_urban_ath_1_0/non_rep"
#> [21] "inma/1_1_outcome_ath_1_0/trimester_rep" "inma/1_1_outcome_ath_1_0/non_rep"
#> [23] "inma/1_0_outcome_ath_1_0/trimester_rep" "inma/1_0_outcome_ath_1_0/non_rep"
#> [25] "longitools/testparquet/LT_example_data" "longitools/mydata/nonrep"In DataSHIELD you can use a variety of methods and packages. To check which are avaiable you can execute the following code:
The available packages displayed by the method, are the serverside R-packages. Which means the packages available on the Armadillo.
conns <- DSI::datashield.login(logins = login_data, assign = F)
dsListPackages(conns$armadillo)
#> name version
#> 1 abind 1.4-5
#> 2 admisc 0.26
#> 3 annotate 1.72.0
#> 4 AnnotationDbi 1.56.2
#> 5 AnnotationFilter 1.18.0
#> 6 arrow 7.0.0
#> 7 askpass 1.1
#> 8 assertthat 0.2.1
#> 9 backports 1.4.1
#> 10 base64 2.0
#> 11 base64enc 0.1-3
#> 12 beanplot 1.3.1
#> 13 BH 1.78.0-0
#> 14 BiasedUrn 1.07
#> 15 Biobase 2.54.0
#> 16 BiocFileCache 2.2.1
#> 17 BiocGenerics 0.40.0
#> 18 BiocIO 1.4.0
#> 19 BiocManager 1.30.20
#> 20 BiocParallel 1.28.3
#> 21 BiocVersion 3.14.0
#> 22 biomaRt 2.50.3
#> 23 Biostrings 2.62.0
#> 24 biovizBase 1.42.0
#> 25 bit 4.0.4
#> 26 bit64 4.0.5
#> 27 bitops 1.0-7
#> 28 blob 1.2.3
#> 29 brio 1.1.3
#> 30 broom 0.8.0
#> 31 BSgenome 1.62.0
#> 32 bslib 0.3.1
#> 33 bumphunter 1.36.0
#> 34 cachem 1.0.6
#> 35 calibrate 1.7.7
#> 36 callr 3.7.0
#> 37 car 3.0-12
#> 38 carData 3.0-5
#> 39 caTools 1.18.2
#> 40 cellranger 1.1.0
#> 41 checkmate 2.0.0
#> 42 childsds 0.8.0
#> 43 circlize 0.4.14
#> 44 cli 3.6.1
#> 45 clipr 0.8.0
#> 46 clue 0.3-60
#> 47 colorspace 2.0-3
#> 48 config 0.3.1
#> 49 corrplot 0.92
#> 50 cpp11 0.4.2
#> 51 crayon 1.5.1
#> 52 credentials 1.3.2
#> 53 crosstalk 1.2.0
#> 54 crul 1.2.0
#> 55 curl 4.3.2
#> 56 data.table 1.14.2
#> 57 DBI 1.1.2
#> 58 dbplyr 2.1.1
#> 59 DelayedArray 0.20.0
#> 60 DelayedMatrixStats 1.16.0
#> 61 Deriv 4.1.3
#> 62 desc 1.4.1
#> 63 DESeq2 1.34.0
#> 64 dichromat 2.0-0
#> 65 diffobj 0.3.5
#> 66 digest 0.6.29
#> 67 DNAcopy 1.68.0
#> 68 docopt 0.7.1
#> 69 doRNG 1.8.2
#> 70 dplyr 1.1.2
#> 71 dsBase 6.3.0
#> 72 dsExposome 2.0.9
#> 73 dsMediation 0.0.3
#> 74 dsMTLBase 0.9.9
#> 75 dsOmics 1.0.18-2
#> 76 dsSurvival 2.1.3
#> 77 DT 0.22
#> 78 dtplyr 1.2.1
#> 79 edgeR 3.36.0
#> 80 elastic 1.2.0
#> 81 ellipse 0.4.2
#> 82 ellipsis 0.3.2
#> 83 ensembldb 2.18.4
#> 84 evaluate 0.15
#> 85 FactoMineR 2.4
#> 86 fANCOVA 0.6-1
#> 87 fansi 1.0.4
#> 88 farver 2.1.0
#> 89 fastICA 1.2-3
#> 90 fastmap 1.1.0
#> 91 FDb.InfiniumMethylation.hg19 2.2.0
#> 92 filelock 1.0.2
#> 93 flashClust 1.01-2
#> 94 forcats 0.5.1
#> 95 foreach 1.5.2
#> 96 forge 0.2.0
#> 97 formatR 1.12
#> 98 Formula 1.2-4
#> 99 formula.tools 1.7.1
#> 100 fs 1.5.2
#> 101 futile.logger 1.4.3
#> 102 futile.options 1.0.1
#> 103 gamlss 5.4-1
#> 104 gamlss.data 6.0-2
#> 105 gamlss.dist 6.0-3
#> 106 gargle 1.2.0
#> 107 gdsfmt 1.30.0
#> 108 genefilter 1.76.0
#> 109 geneplotter 1.72.0
#> 110 generics 0.1.3
#> 111 GENESIS 2.24.2
#> 112 GenomeInfoDb 1.30.1
#> 113 GenomeInfoDbData 1.2.7
#> 114 GenomicAlignments 1.30.0
#> 115 GenomicFeatures 1.46.5
#> 116 GenomicRanges 1.46.1
#> 117 GEOquery 2.62.2
#> 118 ggplot2 3.3.5
#> 119 ggrepel 0.9.1
#> 120 glmnet 4.1-4
#> 121 GlobalOptions 0.1.2
#> 122 globals 0.14.0
#> 123 glue 1.6.2
#> 124 gmm 1.6-6
#> 125 GO.db 3.14.0
#> 126 googledrive 2.0.0
#> 127 googlesheets4 1.0.0
#> 128 gplots 3.1.1
#> 129 gridExtra 2.3
#> 130 gtable 0.3.0
#> 131 gtools 3.9.2
#> 132 Gviz 1.38.4
#> 133 GWASExactHW 1.01
#> 134 GWASTools 1.40.0
#> 135 haven 2.5.0
#> 136 HDF5Array 1.22.1
#> 137 highr 0.9
#> 138 Hmisc 4.7-0
#> 139 hms 1.1.1
#> 140 htmlTable 2.4.0
#> 141 htmltools 0.5.2
#> 142 htmlwidgets 1.5.4
#> 143 httpcode 0.3.0
#> 144 httr 1.4.2
#> 145 ids 1.0.1
#> 146 igraph 1.3.1
#> 147 IlluminaHumanMethylation450kanno.ilmn12.hg19 0.6.0
#> 148 IlluminaHumanMethylation450kmanifest 0.4.0
#> 149 IlluminaHumanMethylationEPICanno.ilm10b4.hg19 0.6.0
#> 150 IlluminaHumanMethylationEPICmanifest 0.3.0
#> 151 illuminaio 0.36.0
#> 152 impute 1.68.0
#> 153 imputeLCMD 2.0
#> 154 IRanges 2.28.0
#> 155 isoband 0.2.5
#> 156 isva 1.9
#> 157 iterators 1.0.14
#> 158 JADE 2.0-3
#> 159 jpeg 0.1-9
#> 160 jqr 1.2.3
#> 161 jquerylib 0.1.4
#> 162 jsonify 1.2.1
#> 163 jsonlite 1.8.0
#> 164 KEGGREST 1.34.0
#> 165 knitr 1.38
#> 166 labeling 0.4.2
#> 167 lambda.r 1.2.4
#> 168 later 1.3.0
#> 169 latticeExtra 0.6-29
#> 170 lazyeval 0.2.2
#> 171 leaps 3.1
#> 172 lifecycle 1.0.3
#> 173 limma 3.50.3
#> 174 littler 0.3.18
#> 175 lme4 1.1-29
#> 176 lmtest 0.9-40
#> 177 lobstr 1.1.1
#> 178 locfit 1.5-9.5
#> 179 logistf 1.24.1
#> 180 lpSolve 5.6.15
#> 181 lsr 0.5.2
#> 182 lubridate 1.8.0
#> 183 magrittr 2.0.3
#> 184 MALDIquant 1.21
#> 185 maptools 1.1-4
#> 186 MatrixGenerics 1.6.0
#> 187 MatrixModels 0.5-0
#> 188 matrixStats 0.62.0
#> 189 mclust 5.4.9
#> 190 MEAL 1.24.0
#> 191 medflex 0.6-7
#> 192 mediation 4.5.0
#> 193 memoise 2.0.1
#> 194 methylumi 2.40.1
#> 195 mice 3.14.0
#> 196 mime 0.12
#> 197 minfi 1.40.0
#> 198 minqa 1.2.4
#> 199 missMethyl 1.28.0
#> 200 modelr 0.1.8
#> 201 MolgenisRserve 0.1.2
#> 202 mongolite 2.6.1
#> 203 multcomp 1.4-18
#> 204 MultiDataSet 1.22.0
#> 205 multtest 2.50.0
#> 206 munsell 0.5.0
#> 207 mvtnorm 1.1-3
#> 208 nloptr 2.0.0
#> 209 nodbi 0.7.0
#> 210 nor1mix 1.3-0
#> 211 norm 1.0-10.0
#> 212 numDeriv 2016.8-1.1
#> 213 openssl 2.0.0
#> 214 operator.tools 1.6.3
#> 215 org.Hs.eg.db 3.14.0
#> 216 pbkrtest 0.5.1
#> 217 pcaMethods 1.86.0
#> 218 permute 0.9-7
#> 219 pillar 1.9.0
#> 220 pkgconfig 2.0.3
#> 221 pkgload 1.2.4
#> 222 plogr 0.2.0
#> 223 plyr 1.8.7
#> 224 png 0.1-7
#> 225 polycor 0.8-1
#> 226 praise 1.0.0
#> 227 preprocessCore 1.56.0
#> 228 prettyunits 1.1.1
#> 229 processx 3.5.3
#> 230 progress 1.2.2
#> 231 promises 1.2.0.1
#> 232 ProtGenerics 1.26.0
#> 233 pryr 0.1.5
#> 234 ps 1.7.5
#> 235 purrr 0.3.4
#> 236 purrrlyr 0.0.8
#> 237 qqman 0.1.8
#> 238 quadprog 1.5-8
#> 239 quantreg 5.88
#> 240 quantsmooth 1.60.0
#> 241 qvalue 2.26.0
#> 242 R.methodsS3 1.8.1
#> 243 R.oo 1.24.0
#> 244 R.utils 2.11.0
#> 245 r2d3 0.2.6
#> 246 R6 2.5.1
#> 247 RANN 2.6.1
#> 248 rapidjsonr 1.2.0
#> 249 rappdirs 0.3.3
#> 250 RColorBrewer 1.1-3
#> 251 Rcpp 1.0.8.3
#> 252 RcppArmadillo 0.11.0.0.0
#> 253 RcppEigen 0.3.3.9.2
#> 254 RCurl 1.98-1.6
#> 255 readr 2.1.2
#> 256 readxl 1.4.0
#> 257 regmedint 1.0.0
#> 258 rematch 1.0.1
#> 259 rematch2 2.1.2
#> 260 remotes 2.4.2
#> 261 reprex 2.0.1
#> 262 reshape 0.8.9
#> 263 reshape2 1.4.4
#> 264 resourcer 1.4.0
#> 265 restfulr 0.0.13
#> 266 rexposome 1.16.0
#> 267 rhdf5 2.38.1
#> 268 rhdf5filters 1.6.0
#> 269 Rhdf5lib 1.16.0
#> 270 Rhtslib 1.26.0
#> 271 rjson 0.2.21
#> 272 rlang 1.1.1
#> 273 RMariaDB 1.2.1
#> 274 rmarkdown 2.13
#> 275 rngtools 1.5.2
#> 276 RPostgres 1.4.3
#> 277 RPresto 1.3.7
#> 278 rprojroot 2.0.3
#> 279 Rsamtools 2.10.0
#> 280 RSpectra 0.16-0
#> 281 RSQLite 2.2.12
#> 282 rstudioapi 0.13
#> 283 rtracklayer 1.54.0
#> 284 ruv 0.9.7.1
#> 285 rvest 1.0.2
#> 286 S4Vectors 0.32.4
#> 287 sandwich 3.0-1
#> 288 sass 0.4.1
#> 289 scales 1.2.0
#> 290 scatterplot3d 0.3-41
#> 291 scrime 1.3.5
#> 292 selectr 0.4-2
#> 293 SeqArray 1.34.0
#> 294 SeqVarTools 1.32.0
#> 295 shape 1.4.6
#> 296 siggenes 1.68.0
#> 297 SmartSVA 0.1.3
#> 298 snow 0.4-4
#> 299 SNPRelate 1.28.0
#> 300 sofa 0.4.0
#> 301 sp 1.4-7
#> 302 sparklyr 1.7.5
#> 303 SparseM 1.81
#> 304 sparseMatrixStats 1.6.0
#> 305 ssh 0.8.0
#> 306 statmod 1.4.36
#> 307 stringi 1.7.6
#> 308 stringr 1.4.0
#> 309 SummarizedExperiment 1.24.0
#> 310 sva 3.42.0
#> 311 sys 3.4
#> 312 testthat 3.1.3
#> 313 TH.data 1.1-0
#> 314 tibble 3.2.1
#> 315 tidyr 1.2.0
#> 316 tidyselect 1.2.0
#> 317 tidyverse 1.3.1
#> 318 tinytex 0.38
#> 319 tmvtnorm 1.5
#> 320 triebeard 0.3.0
#> 321 TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
#> 322 tzdb 0.3.0
#> 323 urltools 1.7.3
#> 324 utf8 1.2.3
#> 325 uuid 1.1-0
#> 326 VariantAnnotation 1.40.0
#> 327 vctrs 0.6.2
#> 328 vegan 2.6-2
#> 329 VGAM 1.1-6
#> 330 viridis 0.6.2
#> 331 viridisLite 0.4.0
#> 332 vroom 1.5.7
#> 333 waldo 0.4.0
#> 334 withr 2.5.0
#> 335 wkb 0.4-0
#> 336 xfun 0.30
#> 337 XML 3.99-0.9
#> 338 xml2 1.3.3
#> 339 xtable 1.8-4
#> 340 XVector 0.34.0
#> 341 yaml 2.3.5
#> 342 zlibbioc 1.40.0
#> 343 zoo 1.8-10
#> 344 base 4.1.3
#> 345 boot 1.3-28
#> 346 class 7.3-20
#> 347 cluster 2.1.2
#> 348 codetools 0.2-18
#> 349 compiler 4.1.3
#> 350 datasets 4.1.3
#> 351 foreign 0.8-82
#> 352 graphics 4.1.3
#> 353 grDevices 4.1.3
#> 354 grid 4.1.3
#> 355 KernSmooth 2.23-20
#> 356 lattice 0.20-45
#> 357 MASS 7.3-55
#> 358 Matrix 1.4-0
#> 359 methods 4.1.3
#> 360 mgcv 1.8-39
#> 361 nlme 3.1-155
#> 362 nnet 7.3-17
#> 363 parallel 4.1.3
#> 364 rpart 4.1.16
#> 365 spatial 7.3-15
#> 366 splines 4.1.3
#> 367 stats 4.1.3
#> 368 stats4 4.1.3
#> 369 survival 3.2-13
#> 370 tcltk 4.1.3
#> 371 tools 4.1.3
#> 372 utils 4.1.3These are the available methods on the Armadillo server.
datashield.methods(conns = conns, type = "aggregate")
#> name value version package type class server
#> 1 extractQuantilesDS1 dsBase::extractQuantilesDS1 6.3.0 dsBase aggregate function armadillo
#> 2 is.character base::is.character NULL base aggregate function armadillo
#> 3 dataFrameSubsetDS1 dsBase::dataFrameSubsetDS1 6.3.0 dsBase aggregate function armadillo
#> 4 meanSdGpDS dsBase::meanSdGpDS 6.3.0 dsBase aggregate function armadillo
#> 5 scatterPlotDS dsBase::scatterPlotDS 6.3.0 dsBase aggregate function armadillo
#> 6 setSeedDS dsBase::setSeedDS 6.3.0 dsBase aggregate function armadillo
#> 7 minMaxRandDS dsBase::minMaxRandDS 6.3.0 dsBase aggregate function armadillo
#> 8 matrixDetDS1 dsBase::matrixDetDS1 6.3.0 dsBase aggregate function armadillo
#> 9 numNaDS dsBase::numNaDS 6.3.0 dsBase aggregate function armadillo
#> 10 asListDS dsBase::asListDS 6.3.0 dsBase aggregate function armadillo
#> 11 is.numeric base::is.numeric NULL base aggregate function armadillo
#> 12 gamlssDS dsBase::gamlssDS 6.3.0 dsBase aggregate function armadillo
#> 13 t.test stats::t.test NULL stats aggregate function armadillo
#> 14 glmPredictDS.ag dsBase::glmPredictDS.ag 6.3.0 dsBase aggregate function armadillo
#> 15 extractQuantilesDS2 dsBase::extractQuantilesDS2 6.3.0 dsBase aggregate function armadillo
#> 16 is.list base::is.list NULL base aggregate function armadillo
#> 17 lengthDS dsBase::lengthDS 6.3.0 dsBase aggregate function armadillo
#> 18 heatmapPlotDS dsBase::heatmapPlotDS 6.3.0 dsBase aggregate function armadillo
#> 19 dimDS dsBase::dimDS 6.3.0 dsBase aggregate function armadillo
#> 20 is.null base::is.null NULL base aggregate function armadillo
#> 21 glmSummaryDS.ag dsBase::glmSummaryDS.ag 6.3.0 dsBase aggregate function armadillo
#> 22 meanDS dsBase::meanDS 6.3.0 dsBase aggregate function armadillo
#> 23 tableDS dsBase::tableDS 6.3.0 dsBase aggregate function armadillo
#> 24 is.factor base::is.factor NULL base aggregate function armadillo
#> 25 corDS dsBase::corDS 6.3.0 dsBase aggregate function armadillo
#> 26 testObjExistsDS dsBase::testObjExistsDS 6.3.0 dsBase aggregate function armadillo
#> 27 hetcorDS dsBase::hetcorDS 6.3.0 dsBase aggregate function armadillo
#> 28 isValidDS dsBase::isValidDS 6.3.0 dsBase aggregate function armadillo
#> 29 table1DDS dsBase::table1DDS 6.3.0 dsBase aggregate function armadillo
#> 30 asFactorDS1 dsBase::asFactorDS1 6.3.0 dsBase aggregate function armadillo
#> 31 glmDS2 dsBase::glmDS2 6.3.0 dsBase aggregate function armadillo
#> 32 glmDS1 dsBase::glmDS1 6.3.0 dsBase aggregate function armadillo
#> 33 covDS dsBase::covDS 6.3.0 dsBase aggregate function armadillo
#> 34 kurtosisDS2 dsBase::kurtosisDS2 6.3.0 dsBase aggregate function armadillo
#> 35 kurtosisDS1 dsBase::kurtosisDS1 6.3.0 dsBase aggregate function armadillo
#> 36 lmerSLMADS2 dsBase::lmerSLMADS2 6.3.0 dsBase aggregate function armadillo
#> 37 rmDS dsBase::rmDS 6.3.0 dsBase aggregate function armadillo
#> 38 exists base::exists NULL base aggregate function armadillo
#> 39 metadataDS dsBase::metadataDS 6.3.0 dsBase aggregate function armadillo
#> 40 rangeDS dsBase::rangeDS 6.3.0 dsBase aggregate function armadillo
#> 41 table2DDS dsBase::table2DDS 6.3.0 dsBase aggregate function armadillo
#> 42 NROW base::NROW NULL base aggregate function armadillo
#> 43 scoreVectDS dsBase::scoreVectDS 6.3.0 dsBase aggregate function armadillo
#> 44 tapplyDS dsBase::tapplyDS 6.3.0 dsBase aggregate function armadillo
#> 45 levelsDS dsBase::levelsDS 6.3.0 dsBase aggregate function armadillo
#> 46 densityGridDS dsBase::densityGridDS 6.3.0 dsBase aggregate function armadillo
#> 47 lexisDS1 dsBase::lexisDS1 6.3.0 dsBase aggregate function armadillo
#> 48 histogramDS1 dsBase::histogramDS1 6.3.0 dsBase aggregate function armadillo
#> 49 histogramDS2 dsBase::histogramDS2 6.3.0 dsBase aggregate function armadillo
#> 50 tableDS2 dsBase::tableDS2 6.3.0 dsBase aggregate function armadillo
#> 51 checkNegValueDS dsBase::checkNegValueDS 6.3.0 dsBase aggregate function armadillo
#> 52 quantileMeanDS dsBase::quantileMeanDS 6.3.0 dsBase aggregate function armadillo
#> 53 ranksSecureDS3 dsBase::ranksSecureDS3 6.3.0 dsBase aggregate function armadillo
#> 54 ranksSecureDS1 dsBase::ranksSecureDS1 6.3.0 dsBase aggregate function armadillo
#> 55 varDS dsBase::varDS 6.3.0 dsBase aggregate function armadillo
#> 56 boxPlotGGDS dsBase::boxPlotGGDS 6.3.0 dsBase aggregate function armadillo
#> 57 colnamesDS dsBase::colnamesDS 6.3.0 dsBase aggregate function armadillo
#> 58 lsDS dsBase::lsDS 6.3.0 dsBase aggregate function armadillo
#> 59 classDS dsBase::classDS 6.3.0 dsBase aggregate function armadillo
#> 60 skewnessDS2 dsBase::skewnessDS2 6.3.0 dsBase aggregate function armadillo
#> 61 isNaDS dsBase::isNaDS 6.3.0 dsBase aggregate function armadillo
#> 62 listDisclosureSettingsDS dsBase::listDisclosureSettingsDS 6.3.0 dsBase aggregate function armadillo
#> 63 skewnessDS1 dsBase::skewnessDS1 6.3.0 dsBase aggregate function armadillo
#> 64 glmerSLMADS2 dsBase::glmerSLMADS2 6.3.0 dsBase aggregate function armadillo
#> 65 glmSLMADS1 dsBase::glmSLMADS1 6.3.0 dsBase aggregate function armadillo
#> 66 glmSLMADS2 dsBase::glmSLMADS2 6.3.0 dsBase aggregate function armadillo
#> 67 aucDS dsBase::aucDS 6.3.0 dsBase aggregate function armadillo
#> 68 namesDS dsBase::namesDS 6.3.0 dsBase aggregate function armadillo
#> 69 corTestDS dsBase::corTestDS 6.3.0 dsBase aggregate function armadillo
#> 70 miceDS dsBase::miceDS 6.3.0 dsBase aggregate function armadillo
#> 71 messageDS dsBase::messageDS 6.3.0 dsBase aggregate function armadillo
datashield.methods(conns = conns, type = "assign")
#> name value version package type class
#> 1 changeRefGroupDS dsBase::changeRefGroupDS 6.3.0 dsBase assign function
#> 2 boxPlotGG_data_TreatmentDS dsBase::boxPlotGG_data_TreatmentDS 6.3.0 dsBase assign function
#> 3 absDS dsBase::absDS 6.3.0 dsBase assign function
#> 4 sqrtDS dsBase::sqrtDS 6.3.0 dsBase assign function
#> 5 dataFrameSubsetDS2 dsBase::dataFrameSubsetDS2 6.3.0 dsBase assign function
#> 6 blackBoxRanksDS dsBase::blackBoxRanksDS 6.3.0 dsBase assign function
#> 7 lsplineDS dsBase::lsplineDS 6.3.0 dsBase assign function
#> 8 matrixDiagDS dsBase::matrixDiagDS 6.3.0 dsBase assign function
#> 9 asNumericDS dsBase::asNumericDS 6.3.0 dsBase assign function
#> 10 glmSLMADS.assign dsBase::glmSLMADS.assign 6.3.0 dsBase assign function
#> 11 asFactorSimpleDS dsBase::asFactorSimpleDS 6.3.0 dsBase assign function
#> 12 asMatrixDS dsBase::asMatrixDS 6.3.0 dsBase assign function
#> 13 matrixDetDS2 dsBase::matrixDetDS2 6.3.0 dsBase assign function
#> 14 matrixTransposeDS dsBase::matrixTransposeDS 6.3.0 dsBase assign function
#> 15 mergeDS dsBase::mergeDS 6.3.0 dsBase assign function
#> 16 cbindDS dsBase::cbindDS 6.3.0 dsBase assign function
#> 17 asListDS dsBase::asListDS 6.3.0 dsBase assign function
#> 18 log base::log NULL base assign function
#> 19 matrixDS dsBase::matrixDS 6.3.0 dsBase assign function
#> 20 blackBoxDS dsBase::blackBoxDS 6.3.0 dsBase assign function
#> 21 tableDS.assign dsBase::tableDS.assign 6.3.0 dsBase assign function
#> 22 repDS dsBase::repDS 6.3.0 dsBase assign function
#> 23 c dsBase::vectorDS NULL dsBase assign function
#> 24 rPoisDS dsBase::rPoisDS 6.3.0 dsBase assign function
#> 25 unListDS dsBase::unListDS 6.3.0 dsBase assign function
#> 26 matrixInvertDS dsBase::matrixInvertDS 6.3.0 dsBase assign function
#> 27 tapplyDS.assign dsBase::tapplyDS.assign 6.3.0 dsBase assign function
#> 28 nsDS dsBase::nsDS 6.3.0 dsBase assign function
#> 29 seqDS dsBase::seqDS 6.3.0 dsBase assign function
#> 30 lmerSLMADS.assign dsBase::lmerSLMADS.assign 6.3.0 dsBase assign function
#> 31 abs base::abs NULL base assign function
#> 32 dataFrameFillDS dsBase::dataFrameFillDS 6.3.0 dsBase assign function
#> 33 subsetDS dsBase::subsetDS 6.3.0 dsBase assign function
#> 34 rNormDS dsBase::rNormDS 6.3.0 dsBase assign function
#> 35 bp_standardsDS dsBase::bp_standardsDS 6.3.0 dsBase assign function
#> 36 recodeLevelsDS dsBase::recodeLevelsDS 6.3.0 dsBase assign function
#> 37 dataFrameSortDS dsBase::dataFrameSortDS 6.3.0 dsBase assign function
#> 38 rBinomDS dsBase::rBinomDS 6.3.0 dsBase assign function
#> 39 cDS dsBase::cDS 6.3.0 dsBase assign function
#> 40 glmSummaryDS.as dsBase::glmSummaryDS.as 6.3.0 dsBase assign function
#> 41 vectorDS dsBase::vectorDS 6.3.0 dsBase assign function
#> 42 atan base::atan NULL base assign function
#> 43 dataFrameDS dsBase::dataFrameDS 6.3.0 dsBase assign function
#> 44 sin base::sin NULL base assign function
#> 45 asFactorDS2 dsBase::asFactorDS2 6.3.0 dsBase assign function
#> 46 completeCasesDS dsBase::completeCasesDS 6.3.0 dsBase assign function
#> 47 matrixMultDS dsBase::matrixMultDS 6.3.0 dsBase assign function
#> 48 subsetByClassDS dsBase::subsetByClassDS 6.3.0 dsBase assign function
#> 49 recodeValuesDS dsBase::recodeValuesDS 6.3.0 dsBase assign function
#> 50 unlist base::unlist NULL base assign function
#> 51 rbindDS dsBase::rbindDS 6.3.0 dsBase assign function
#> 52 reShapeDS dsBase::reShapeDS 6.3.0 dsBase assign function
#> 53 rUnifDS dsBase::rUnifDS 6.3.0 dsBase assign function
#> 54 cos base::cos NULL base assign function
#> 55 elsplineDS dsBase::elsplineDS 6.3.0 dsBase assign function
#> 56 igb_standardsDS dsBase::igb_standardsDS 6.3.0 dsBase assign function
#> 57 as.numeric base::as.numeric NULL base assign function
#> 58 list base::list NULL base assign function
#> 59 asIntegerDS dsBase::asIntegerDS 6.3.0 dsBase assign function
#> 60 qlsplineDS dsBase::qlsplineDS 6.3.0 dsBase assign function
#> 61 lexisDS2 dsBase::lexisDS2 6.3.0 dsBase assign function
#> 62 as.null base::as.null NULL base assign function
#> 63 sum base::sum NULL base assign function
#> 64 lexisDS3 dsBase::lexisDS3 6.3.0 dsBase assign function
#> 65 asLogicalDS dsBase::asLogicalDS 6.3.0 dsBase assign function
#> 66 matrixDimnamesDS dsBase::matrixDimnamesDS 6.3.0 dsBase assign function
#> 67 uniqueDS dsBase::uniqueDS 6.3.0 dsBase assign function
#> 68 ranksSecureDS5 dsBase::ranksSecureDS5 6.3.0 dsBase assign function
#> 69 asin base::asin NULL base assign function
#> 70 boxPlotGG_data_Treatment_numericDS dsBase::boxPlotGG_data_Treatment_numericDS 6.3.0 dsBase assign function
#> 71 ranksSecureDS4 dsBase::ranksSecureDS4 6.3.0 dsBase assign function
#> 72 complete.cases stats::complete.cases NULL stats assign function
#> 73 ranksSecureDS2 dsBase::ranksSecureDS2 6.3.0 dsBase assign function
#> 74 getWGSRDS dsBase::getWGSRDS 6.3.0 dsBase assign function
#> 75 listDS dsBase::listDS 6.3.0 dsBase assign function
#> 76 attach base::attach NULL base assign function
#> 77 acos base::acos NULL base assign function
#> 78 glmPredictDS.as dsBase::glmPredictDS.as 6.3.0 dsBase assign function
#> 79 asCharacterDS dsBase::asCharacterDS 6.3.0 dsBase assign function
#> 80 exp base::exp NULL base assign function
#> 81 replaceNaDS dsBase::replaceNaDS 6.3.0 dsBase assign function
#> 82 rowColCalcDS dsBase::rowColCalcDS 6.3.0 dsBase assign function
#> 83 sampleDS dsBase::sampleDS 6.3.0 dsBase assign function
#> 84 as.character base::as.character NULL base assign function
#> 85 sqrt base::sqrt NULL base assign function
#> 86 glmerSLMADS.assign dsBase::glmerSLMADS.assign 6.3.0 dsBase assign function
#> 87 BooleDS dsBase::BooleDS 6.3.0 dsBase assign function
#> 88 asDataMatrixDS dsBase::asDataMatrixDS 6.3.0 dsBase assign function
#> 89 dmtC2SDS dsBase::dmtC2SDS 6.3.0 dsBase assign function
#> 90 tan base::tan NULL base assign function
#> 91 as.resource.data.frame resourcer::as.resource.data.frame 1.4.0 resourcer assign function
#> 92 as.resource.object resourcer::as.resource.object 1.4.0 resourcer assign function
#> 93 as.resource.tbl resourcer::as.resource.tbl 1.4.0 resourcer assign function
#> server
#> 1 armadillo
#> 2 armadillo
#> 3 armadillo
#> 4 armadillo
#> 5 armadillo
#> 6 armadillo
#> 7 armadillo
#> 8 armadillo
#> 9 armadillo
#> 10 armadillo
#> 11 armadillo
#> 12 armadillo
#> 13 armadillo
#> 14 armadillo
#> 15 armadillo
#> 16 armadillo
#> 17 armadillo
#> 18 armadillo
#> 19 armadillo
#> 20 armadillo
#> 21 armadillo
#> 22 armadillo
#> 23 armadillo
#> 24 armadillo
#> 25 armadillo
#> 26 armadillo
#> 27 armadillo
#> 28 armadillo
#> 29 armadillo
#> 30 armadillo
#> 31 armadillo
#> 32 armadillo
#> 33 armadillo
#> 34 armadillo
#> 35 armadillo
#> 36 armadillo
#> 37 armadillo
#> 38 armadillo
#> 39 armadillo
#> 40 armadillo
#> 41 armadillo
#> 42 armadillo
#> 43 armadillo
#> 44 armadillo
#> 45 armadillo
#> 46 armadillo
#> 47 armadillo
#> 48 armadillo
#> 49 armadillo
#> 50 armadillo
#> 51 armadillo
#> 52 armadillo
#> 53 armadillo
#> 54 armadillo
#> 55 armadillo
#> 56 armadillo
#> 57 armadillo
#> 58 armadillo
#> 59 armadillo
#> 60 armadillo
#> 61 armadillo
#> 62 armadillo
#> 63 armadillo
#> 64 armadillo
#> 65 armadillo
#> 66 armadillo
#> 67 armadillo
#> 68 armadillo
#> 69 armadillo
#> 70 armadillo
#> 71 armadillo
#> 72 armadillo
#> 73 armadillo
#> 74 armadillo
#> 75 armadillo
#> 76 armadillo
#> 77 armadillo
#> 78 armadillo
#> 79 armadillo
#> 80 armadillo
#> 81 armadillo
#> 82 armadillo
#> 83 armadillo
#> 84 armadillo
#> 85 armadillo
#> 86 armadillo
#> 87 armadillo
#> 88 armadillo
#> 89 armadillo
#> 90 armadillo
#> 91 armadillo
#> 92 armadillo
#> 93 armadillo