| AaJ | The Aalen-Johansen estimator of state probabilities from a multistate 'Lexis' object. | 
| AaJ.Lexis | The Aalen-Johansen estimator of state probabilities from a multistate 'Lexis' object. | 
| absorbing | Time series and other methods for Lexis objects | 
| addCov | Add covariates (typically clinical measurements) taken at known times to a Lexis object. | 
| addCov.Lexis | Add covariates (typically clinical measurements) taken at known times to a Lexis object. | 
| addDrug | Expand a Lexis object with information of drug exposure based on purchase dates and -amounts | 
| addDrug.Lexis | Expand a Lexis object with information of drug exposure based on purchase dates and -amounts | 
| after | Time series and other methods for Lexis objects | 
| apc.fit | Fit an Age-Period-Cohort model to tabular data. | 
| apc.frame | Produce an empty frame for display of parameter-estimates from Age-Period-Cohort-models. | 
| apc.LCa | Fit Age-Period-Cohort models and Lee-Carter models with effects modeled by natural splines. | 
| apc.lines | Plot APC-estimates in an APC-frame. | 
| apc.plot | Plot the estimates from a fitted Age-Period-Cohort model | 
| Aplot | Functions to plot rates from a table classified by age and calendar time (period) | 
| as.Date.cal.yr | Functions to convert character, factor and various date objects into a number, and vice versa. | 
| B.dk | Births in Denmark by year and month of birth and sex | 
| bdendo | A case-control study of endometrial cancer | 
| bdendo11 | A case-control study of endometrial cancer | 
| before | Time series and other methods for Lexis objects | 
| births | Births in a London Hospital | 
| blcaIT | Bladder cancer mortality in Italian males | 
| bootLexis | Create a bootstrap sample of persons (as identified by 'lex.id') from a Lexis object | 
| boxarr | Draw boxes and arrows for illustration of multistate models. | 
| boxes | Draw boxes and arrows for illustration of multistate models. | 
| boxes.Lexis | Draw boxes and arrows for illustration of multistate models. | 
| boxes.matrix | Draw boxes and arrows for illustration of multistate models. | 
| boxes.MS | Draw boxes and arrows for illustration of multistate models. | 
| BrCa | Clinical status, relapse, metastasis and death in 2982 women with breast cancer. | 
| breaks | Extract time band data from a split Lexis object | 
| brv | Bereavement in an elderly cohort | 
| cal.yr | Functions to convert character, factor and various date objects into a number, and vice versa. | 
| cbind.Lexis | Combining a Lexis objects with data frames or other Lexis objects | 
| ccwc | Generate a nested case-control study | 
| ci.Crisk | Compute cumulative risks and expected sojourn times from models for cause-specific rates. | 
| ci.cum | Compute cumulative sum of estimates. | 
| ci.eta | Linear predictor ('eta') from a formula, coefficients, vcov and a prediction frame. | 
| ci.exp | Compute linear functions of parameters with standard errors and confidence limits, optionally transforming to a different scale. | 
| ci.lin | Compute linear functions of parameters with standard errors and confidence limits, optionally transforming to a different scale. | 
| ci.mat | Compute linear functions of parameters with standard errors and confidence limits, optionally transforming to a different scale. | 
| ci.pd | Compute confidence limits for a difference of two independent proportions. | 
| ci.pred | Compute linear functions of parameters with standard errors and confidence limits, optionally transforming to a different scale. | 
| ci.ratio | Compute linear functions of parameters with standard errors and confidence limits, optionally transforming to a different scale. | 
| ci.surv | Compute cumulative sum of estimates. | 
| clear | Functions to manage and explore the workspace | 
| clogistic | Conditional logistic regression | 
| coarse.Lexis | Expand a Lexis object with information of drug exposure based on purchase dates and -amounts | 
| contr.2nd | Contrast matrices | 
| contr.cum | Contrast matrices | 
| contr.diff | Contrast matrices | 
| contr.orth | Contrast matrices | 
| count | Special functions for use in stat.table | 
| countLexis | Cut follow-up at a specified date for each person. | 
| coxph.Lexis | Fit intensity models to follow-up data in Lexis objects | 
| coxphLexis | Fit intensity models to follow-up data in Lexis objects | 
| cp.lines | Plot period and cohort effects in an APC-frame. | 
| cp.matlines | Plot period and cohort effects in an APC-frame. | 
| cp.matpoints | Plot period and cohort effects in an APC-frame. | 
| cp.matshade | Plot period and cohort effects in an APC-frame. | 
| cp.points | Plot period and cohort effects in an APC-frame. | 
| Cplot | Functions to plot rates from a table classified by age and calendar time (period) | 
| crr.Lexis | Fit a competing risks regression model (Fine-Gray model) using a Lexis object) | 
| cutLexis | Cut follow-up at a specified date for each person. | 
| effx | Function to calculate effects | 
| effx.match | Function to calculate effects for individually matched case-control studies | 
| entry | Time series and other methods for Lexis objects | 
| Epi | Epi: Functions for manipulation and statistical analysis of epidemiological data | 
| erl | Compute survival functions from rates and expected residual lifetime in an illness-death model as well as years of life lost to disease. | 
| erl1 | Compute survival functions from rates and expected residual lifetime in an illness-death model as well as years of life lost to disease. | 
| etm | Create a data structures suitable for use with packages 'mstate' or 'etm'. | 
| etm.Lexis | Create a data structures suitable for use with packages 'mstate' or 'etm'. | 
| ewrates | Rates of lung and nasal cancer mortality, and total mortality. | 
| exit | Time series and other methods for Lexis objects | 
| expand.data | Function to expand data for regression analysis of interval censored data. | 
| LCa.fit | Fit Lee-Carter-type models for rates to arbitrarily shaped observations of rates in a Lexis diagram. | 
| legendbox | Draw a box with text explaining the numbers in and between boxes from 'boxes.MS' and 'boxes.Lexis' | 
| lep | An unmatched case-control study of leprosy incidence | 
| levels.Lexis | Transform a Lexis (or stacked.Lexis) object | 
| Lexis | Create a Lexis object of follow-up | 
| Lexis.diagram | Plot a Lexis diagram | 
| Lexis.lines | Draw life lines in a Lexis diagram. | 
| Lexis2msm | Convert a Lexis obejct to a data set suitable for input to the 'msm:msm' function. | 
| lgrep | Convenience versions of grep | 
| Life.lines | Compute dates/ages for life lines in a Lexis diagram | 
| lines.apc | Plot APC-estimates in an APC-frame. | 
| lines.Lexis | Lexis diagrams | 
| lines.pState | Simulate a Lexis object representing follow-up in a multistate model. | 
| linesEst | Plot estimates with confidence limits (forest plot) | 
| lls | Functions to manage and explore the workspace | 
| lungDK | Male lung cancer incidence in Denmark | 
| M.dk | Mortality in Denmark 1974 ff. | 
| mat2pol | Plot columns of a matrix as stacked areas. | 
| matshade | Plot confidence intervals as shaded areas around lines. | 
| mcutLexis | Cut follow-up at multiple event dates and keep track of order of events | 
| merge.Lexis | Merge a Lexis object with a data frame | 
| mh | Mantel-Haenszel analyses of cohort and case-control studies | 
| mortDK | Population mortality rates for Denmark in 1-year age-classes. | 
| msdata | Create a data structures suitable for use with packages 'mstate' or 'etm'. | 
| msdata.Lexis | Create a data structures suitable for use with packages 'mstate' or 'etm'. | 
| N.dk | Population size in Denmark | 
| N2Y | Create risk time ("Person-Years") in Lexis triangles from population count data. | 
| NArray | Set up an array of NAs, solely from the list of dimnames | 
| ncut | Function to group a variable in intervals. | 
| ngrep | Convenience versions of grep | 
| nice | Nice breakpoints for axes on plots | 
| nickel | A Cohort of Nickel Smelters in South Wales | 
| nid | Create a bootstrap sample of persons (as identified by 'lex.id') from a Lexis object | 
| nid.Lexis | Create a bootstrap sample of persons (as identified by 'lex.id') from a Lexis object | 
| Ns | Natural splines - (cubic splines linear beyond outermost knots) with convenient specification of knots and possibility of centering, detrending and clamping. | 
| nState | Simulate a Lexis object representing follow-up in a multistate model. | 
| paths.Lexis | Generate paths travelled through a Lexis multistate model data frame. | 
| pc.lines | Plot period and cohort effects in an APC-frame. | 
| pc.matlines | Plot period and cohort effects in an APC-frame. | 
| pc.matpoints | Plot period and cohort effects in an APC-frame. | 
| pc.matshade | Plot period and cohort effects in an APC-frame. | 
| pc.points | Plot period and cohort effects in an APC-frame. | 
| pctab | Create percentages in a table | 
| percent | Special functions for use in stat.table | 
| plot.apc | Plot the estimates from a fitted Age-Period-Cohort model | 
| plot.LCa | Fit Lee-Carter-type models for rates to arbitrarily shaped observations of rates in a Lexis diagram. | 
| plot.Lexis | Lexis diagrams | 
| plot.pState | Simulate a Lexis object representing follow-up in a multistate model. | 
| plotCIF | Plotting Aalen-Johansen curves for competing events | 
| plotEst | Plot estimates with confidence limits (forest plot) | 
| plotevent | Plot Equivalence Classes | 
| points.Lexis | Lexis diagrams | 
| pointsEst | Plot estimates with confidence limits (forest plot) | 
| poisreg | Family Object for Poisson Regression | 
| Pplot | Functions to plot rates from a table classified by age and calendar time (period) | 
| pr | Diabetes prevance as of 2010-01-01 in Denmark | 
| preceding | Time series and other methods for Lexis objects | 
| predict.LCa | Fit Lee-Carter-type models for rates to arbitrarily shaped observations of rates in a Lexis diagram. | 
| print.floated | Calculate floated variances | 
| print.Icens | Fits a regression model to interval censored data. | 
| print.LCa | Fit Lee-Carter-type models for rates to arbitrarily shaped observations of rates in a Lexis diagram. | 
| print.Lexis | Create a Lexis object of follow-up | 
| print.mh | Mantel-Haenszel analyses of cohort and case-control studies | 
| print.stat.table | Tables of summary statistics | 
| print.summary.Lexis | Summarize transitions and risk time from a Lexis object | 
| projection.ip | Projection of columns of a matrix. | 
| pState | Simulate a Lexis object representing follow-up in a multistate model. | 
| PY.ann | Lexis diagrams | 
| PY.ann.Lexis | Lexis diagrams | 
| S.typh | Salmonella Typhimurium outbreak 1996 in Denmark. | 
| show.apc.LCa | Fit Age-Period-Cohort models and Lee-Carter models with effects modeled by natural splines. | 
| simLexis | Simulate a Lexis object representing follow-up in a multistate model. | 
| sortLexis | Transform a Lexis (or stacked.Lexis) object | 
| splitLexis | Split follow-up time in a Lexis object | 
| st2alb | Clinical trial: Steno2 baseline and follow-up. | 
| st2clin | Clinical trial: Steno2 baseline and follow-up. | 
| stack.Lexis | Functions to facilitate analysis of multistate models. | 
| stackedCIF | Plotting Aalen-Johansen curves for competing events | 
| stat.table | Tables of summary statistics | 
| status | Time series and other methods for Lexis objects | 
| steno2 | Clinical trial: Steno2 baseline and follow-up. | 
| subset.Lexis | Subsetting Lexis (and stacked.Lexis) objects | 
| subset.stacked.Lexis | Subsetting Lexis (and stacked.Lexis) objects | 
| succeeding | Time series and other methods for Lexis objects | 
| summary.Icens | Fits a regression model to interval censored data. | 
| summary.LCa | Fit Lee-Carter-type models for rates to arbitrarily shaped observations of rates in a Lexis diagram. | 
| summary.Lexis | Summarize transitions and risk time from a Lexis object | 
| surv1 | Compute survival functions from rates and expected residual lifetime in an illness-death model as well as years of life lost to disease. | 
| surv2 | Compute survival functions from rates and expected residual lifetime in an illness-death model as well as years of life lost to disease. | 
| tbox | Draw boxes and arrows for illustration of multistate models. | 
| Termplot | A wrapper for 'termplot' that optionally (but by default) exponentiates terms, and plot them on a common log-scale. Also scales x-axes to the same physical scale. | 
| testisDK | Testis cancer incidence in Denmark, 1943-1996 | 
| thinCol | Is 'x' in the column span of matrix 'A' and what columns are linearly dependent? | 
| thoro | Thorotrast Study | 
| timeBand | Extract time band data from a split Lexis object | 
| timeScales | The time scales of a Lexis object | 
| timeSince | The time scales of a Lexis object | 
| tmat | Functions to facilitate analysis of multistate models. | 
| tmat.Lexis | Functions to facilitate analysis of multistate models. | 
| transform.Lexis | Transform a Lexis (or stacked.Lexis) object | 
| transform.stacked.Lexis | Transform a Lexis (or stacked.Lexis) object | 
| transient | Time series and other methods for Lexis objects | 
| tsNA20 | The time scales of a Lexis object | 
| twoby2 | Analysis of a two by two table |