'DataSHIELD' Server Site Base Functions

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Documentation for package ‘dsBase’ version 6.3.3

• DESCRIPTION file.

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A B C D E G H I K L M N Q R S T U V

-- A --

absDS	Computes the absolute values of the input variable
asCharacterDS	Coerces an R object into class character
asDataMatrixDS	asDataMatrixDS a serverside assign function called by ds.asDataMatrix
asFactorDS1	Determines the levels of the input variable in each single study
asFactorDS2	Converts a numeric vector into a factor
asFactorSimpleDS	Converts a numeric vector into a factor
asIntegerDS	Coerces an R object into class integer
asListDS	asListDS a serverside aggregate function called by ds.asList
asLogicalDS	Coerces an R object into class numeric
asMatrixDS	Coerces an R object into a matrix
asNumericDS	Coerces an R object into class numeric
aucDS	aucDS an aggregate function called by ds.auc

-- B --

blackBoxDS	Secure ranking of "V2BR" (vector to be ranked) across all sources
blackBoxRanksDS	Secure ranking of "V2BR" (vector to be ranked) across all sources
BooleDS	BooleDS
boxPlotGGDS	Create the identity stats and necessary data to draw a plot on the client
boxPlotGG_data_TreatmentDS	Arrange data frame to pass it to the boxplot function
boxPlotGG_data_Treatment_numericDS	Arrange vector to pass it to the boxplot function
bp_standardsDS	Calculates Blood pressure z-scores

-- C --

cbindDS	cbindDS called by ds.cbind
cDS	Concatenates objects into a vector or list
changeRefGroupDS	Changes a reference level of a factor
checkNegValueDS	Checks if a numeric variable has negative values
checkPermissivePrivacyControlLevel	checkPermissivePrivacyControlLevel
classDS	Returns the class of an object
colnamesDS	Returns the column names of a data frame or matrix
completeCasesDS	completeCasesDS: an assign function called by ds.completeCases
corDS	Computes the sum of each variable and the sum of products for each pair of variables
corTestDS	Tests for correlation between paired samples
covDS	Computes the sum of each variable and the sum of products for each pair of variables

-- D --

dataFrameDS	dataFrameDS called by ds.dataFrame
dataFrameFillDS	dataFrameFillDS
dataFrameSortDS	Sorting and reordering data frames, vectors or matrices
dataFrameSubsetDS1	dataFrameSubsetDS1 an aggregate function called by ds.dataFrameSubset
dataFrameSubsetDS2	dataFrameSubsetDS2 an assign function called by ds.dataFrameSubset
densityGridDS	Generates a density grid with or without a priori defined limits
dimDS	Returns the dimension of a data frame or matrix
dmtC2SDS	Copy a clientside data.frame, matrix or tibble (DMT) to the serverside.

-- E --

elsplineDS	Basis for a piecewise linear spline with meaningful coefficients
extractQuantilesDS1	Secure ranking of "V2BR" (vector to be ranked) across all sources and use of these ranks to estimate global quantiles across all studies
extractQuantilesDS2	Secure ranking of "V2BR" (vector to be ranked) across all sources and use of these ranks to estimate global quantiles across all studies

-- G --

gamlssDS	gamlssDS an aggregate function called by ds.galmss
getWGSRDS	Computes the WHO Growth Reference z-scores of anthropometric data
glmDS1	glmDS1 called by ds.glm
glmDS2	glmDS2 called by ds.glm
glmerSLMADS.assign	Fitting generalized linear mixed effect models - serverside function
glmerSLMADS2	Fitting generalized linear mixed effect models - serverside function
glmPredictDS.ag	predict regression responses from a glm object
glmPredictDS.as	predict regression responses from a glm object
glmSLMADS.assign	Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)
glmSLMADS1	Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)
glmSLMADS2	Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)
glmSummaryDS.ag	summarize a glm object on the serverside
glmSummaryDS.as	summarize a glm object on the serverside

-- H --

heatmapPlotDS	Calculates the coordinates of the centroid of each n nearest neighbours
hetcorDS	Heterogeneous Correlation Matrix
histogramDS1	returns the minimum and the maximum of the input numeric vector
histogramDS2	Computes a histogram of the input variable without plotting.

-- I --

igb_standardsDS	Converts birth measurements to intergrowth z-scores/centiles
isNaDS	Checks if a vector is empty
isValidDS	Checks if an input is valid

-- K --

kurtosisDS1	Calculates the kurtosis of a numeric variable
kurtosisDS2	Calculates the kurtosis of a numeric variable

-- L --

lengthDS	Returns the length of a vector or list
levelsDS	Returns the levels of a factor vector
lexisDS1	lexisDS1
lexisDS2	lexisDS2
lexisDS3	@title lexisDS3
listDisclosureSettingsDS	listDisclosureSettingsDS
listDS	Coerce objects into a list
lmerSLMADS.assign	Fitting linear mixed effect models - serverside function
lmerSLMADS2	Fitting linear mixed effect models - serverside function
lsDS	lists all objects on a serverside environment
lsplineDS	Basis for a piecewise linear spline with meaningful coefficients

-- M --

matrixDetDS1	matrixDetDS aggregate function called by ds.matrixDet.report
matrixDetDS2	matrixDetDS assign function called by ds.matrixDet
matrixDiagDS	matrixDiagDS assign function called by ds.matrixDiag
matrixDimnamesDS	matrixDimnamesDS assign function called by ds.matrixDimnames
matrixDS	matrixDS assign function called by ds.matrix
matrixInvertDS	matrixInvertDS serverside assign function called by ds.matrixInvert
matrixMultDS	matrixMultDS serverside assign function called by ds.matrixMult
matrixTransposeDS	matrixTransposeDS serverside assign function called by ds.matrixTranspose
meanDS	Computes statistical mean of a vectores
meanSdGpDS	MeanSdGpDS
mergeDS	mergeDS (assign function) called by ds.merge
messageDS	messageDS
metadataDS	Returns the metadata, if any, about the specified variable
miceDS	Aggregate function called by ds.mice
minMaxRandDS	Secure ranking of "V2BR" (vector to be ranked) across all sources

-- N --

namesDS	Return the names of a list object
nsDS	Generate a Basis Matrix for Natural Cubic Splines
numNaDS	Counts the number of missing values

-- Q --

qlsplineDS	Basis for a piecewise linear spline with meaningful coefficients
quantileMeanDS	Generates quantiles and mean information without maximum and minimum

-- R --

rangeDS	returns the minimum and maximum of a numeric vector
ranksSecureDS1	Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS2	Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS3	Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS4	Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS5	Secure ranking of "V2BR" (vector to be ranked) across all sources
rbindDS	rbindDS called by ds.rbind
rBinomDS	rBinomDS serverside assign function
recodeLevelsDS	Recodes the levels of a categorical variables
recodeValuesDS	recodeValuesDS an assign function called by ds.recodeValues
repDS	repDS called by ds.rep
replaceNaDS	Replaces the missing values in a vector
reShapeDS	reShapeDS (assign function) called by ds.reShape
rmDS	rmDS an aggregate function called by ds.rm
rNormDS	rNormDS serverside assign function
rowColCalcDS	Computes sums and means of rows or columns of numeric arrays
rPoisDS	rPoisDS serverside assign function
rUnifDS	rUnifDS serverside assign function

-- S --

sampleDS	random sampling and permuting of vectors, dataframes and matrices
scatterPlotDS	Calculates the coordinates of the data to be plot
seqDS	seqDS a serverside assign function called by ds.seq
setSeedDS	setSeedDs called by ds.setSeed, ds.rNorm, ds.rUnif, ds.rPois and ds.rBinom
skewnessDS1	Calculates the skewness of a numeric variable
skewnessDS2	Calculates the skewness of a numeric variable
sqrtDS	Computes the square root values of the input variable
subsetByClassDS	Breaks down a dataframe or a factor into its sub-classes
subsetDS	Generates a valid subset of a table or a vector

-- T --

table1DDS	Creates 1-dimensional contingency tables
table2DDS	table2DDS (aggregate function) called by ds.table2D
tableDS	tableDS is the first of two serverside aggregate functions called by ds.table
tableDS.assign	tableDS.assign is the serverside assign function called by ds.table
tableDS2	tableDS is the second of two serverside aggregate functions called by ds.table
tapplyDS	tapplyDS called by ds.tapply
tapplyDS.assign	tapplyDS.assign called by ds.tapply.assign
testObjExistsDS	testObjExistsDS

-- U --

uniqueDS	Applies the 'unique' method to a server-side variable.
unListDS	'unListDS' a serverside assign function called by 'ds.unList'

-- V --

varDS	Computes the variance of vector
vectorDS	Creates a vector on the server-side.