Last updated on 2025-08-01 09:50:57 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.3 | 8.18 | 142.63 | 150.81 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.3 | 6.09 | 94.80 | 100.89 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.3 | 235.39 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.3 | 238.10 | NOTE | |||
| r-devel-windows-x86_64 | 0.2.3 | 11.00 | 144.00 | 155.00 | OK | |
| r-patched-linux-x86_64 | 0.2.3 | 9.45 | 130.32 | 139.77 | OK | |
| r-release-linux-x86_64 | 0.2.3 | 8.78 | 132.15 | 140.93 | OK | |
| r-release-macos-arm64 | 0.2.3 | 62.00 | OK | |||
| r-release-macos-x86_64 | 0.2.3 | 186.00 | OK | |||
| r-release-windows-x86_64 | 0.2.3 | 12.00 | 143.00 | 155.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.3 | 61.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.3 | 116.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.3 | 15.00 | 181.00 | 196.00 | OK |
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in ‘biclustermd-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tune_biclustermd
> ### Title: Bicluster data over a grid of tuning parameters
> ### Aliases: tune_biclustermd
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> library(ggplot2)
> data("synthetic")
> tg <- expand.grid(
+ miss_val = fivenum(synthetic),
+ similarity = c("Rand", "HA", "Jaccard"),
+ col_min_num = 2,
+ row_min_num = 2,
+ col_clusters = 3:5,
+ row_clusters = 2
+ )
> tg
miss_val similarity col_min_num row_min_num col_clusters row_clusters
1 5 Rand 2 2 3 2
2 10 Rand 2 2 3 2
3 20 Rand 2 2 3 2
4 25 Rand 2 2 3 2
5 30 Rand 2 2 3 2
6 5 HA 2 2 3 2
7 10 HA 2 2 3 2
8 20 HA 2 2 3 2
9 25 HA 2 2 3 2
10 30 HA 2 2 3 2
11 5 Jaccard 2 2 3 2
12 10 Jaccard 2 2 3 2
13 20 Jaccard 2 2 3 2
14 25 Jaccard 2 2 3 2
15 30 Jaccard 2 2 3 2
16 5 Rand 2 2 4 2
17 10 Rand 2 2 4 2
18 20 Rand 2 2 4 2
19 25 Rand 2 2 4 2
20 30 Rand 2 2 4 2
21 5 HA 2 2 4 2
22 10 HA 2 2 4 2
23 20 HA 2 2 4 2
24 25 HA 2 2 4 2
25 30 HA 2 2 4 2
26 5 Jaccard 2 2 4 2
27 10 Jaccard 2 2 4 2
28 20 Jaccard 2 2 4 2
29 25 Jaccard 2 2 4 2
30 30 Jaccard 2 2 4 2
31 5 Rand 2 2 5 2
32 10 Rand 2 2 5 2
33 20 Rand 2 2 5 2
34 25 Rand 2 2 5 2
35 30 Rand 2 2 5 2
36 5 HA 2 2 5 2
37 10 HA 2 2 5 2
38 20 HA 2 2 5 2
39 25 HA 2 2 5 2
40 30 HA 2 2 5 2
41 5 Jaccard 2 2 5 2
42 10 Jaccard 2 2 5 2
43 20 Jaccard 2 2 5 2
44 25 Jaccard 2 2 5 2
45 30 Jaccard 2 2 5 2
>
> # in parallel: two cores:
> tbc <- tune_biclustermd(synthetic, nrep = 2, parallel = TRUE, ncores = 2, tune_grid = tg)
Error in { : task 1 failed - "incorrect number of dimensions"
> tbc
$msg
[1] "foreach failed"
$results
[1] "Error in { : task 1 failed - \"incorrect number of dimensions\"\n"
attr(,"class")
[1] "try-error"
attr(,"condition")
<simpleError in { defaults[tune_params] <- tune_grid[i, ] do.call(rep_biclustermd, defaults)}: task 1 failed - "incorrect number of dimensions">
>
> tbc$grid %>%
+ group_by(miss_val, col_clusters) %>%
+ summarise(avg_sd = mean(sd_sse)) %>%
+ ggplot(aes(miss_val, avg_sd, color = col_clusters, group = col_clusters)) +
+ geom_line() +
+ geom_point()
Error in UseMethod("group_by") :
no applicable method for 'group_by' applied to an object of class "NULL"
Calls: %>% -> ggplot -> summarise -> group_by
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
biclustermd 4.249 0.129 6.327
rep_biclustermd 0.803 0.039 5.682
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.3
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘nycflights13’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc