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Contents of README:PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). For details and citation New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. Systematic Biology, 59(3):307-21, 2010. |
Name Last modified Size
Parent Directory - PhyML.SlackBuild 01-Jul-2012 02:02 3.1K PhyML.info 01-Jul-2012 02:02 296 README 01-Jul-2012 02:02 889 References 22-Dec-2011 00:00 226 slack-desc 01-Jul-2012 02:02 897
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