![]() |
Welcome to ftp.nluug.nl Current directory: /ftp/os/Linux/distr/salix/sbo/14.2/academic/cistrome-conductGO/ |
|
Contents of README:The cistrome refers to "the set of cis-acting targets of a trans- acting factor on a genome-wide scale, also known as the in vivo genome-wide location of transcription factor binding-sites or histone modifications". The term cistrome is a portmanteau of cistron + genome and was coined by investigators at the Dana-Farber Cancer Institute and Harvard Medical School. This is cistrome-conductGO (GO analysis): a galaxy tool to find the top-n highest expressed TFs. For a list of input genes, this tool uses R/BioC packages (GO, GOstats) to identify over represented GO terms. GO analysis depends on several R script tools (GOstats, GO.db, hgu133a.db, hgu133b.db, hgu133plus2.db, hgu95av2.db, mouse430a2.db, celegans.db, drosophila2.db, org.Hs.eg.db, org.Mm.eg.db, org.Ce.eg.db, org.Dm.eg.db). Visit https://bioconductor.org/ for details and see "biocondictor.txt" (also copied to the documentation folder of the created package) for batch installation of the required Bioconductor Packages. NOTE! This just repackages the script redistributed by the UniPro Ugene project, part of their External Tools package. This is the reason the homepage link points to Ugene. The source is hosted on Source Forge by the SlackBuild maintainer. |
Name Last modified Size
Parent Directory -
README 02-Jul-2016 02:48 1.2K
bioconductor.txt 02-Jul-2016 02:48 303
cistrome-conductGO.SlackBuild 14-Jun-2018 16:00 2.3K
cistrome-conductGO.info 02-Jul-2016 02:48 345
slack-desc 02-Jul-2016 02:48 832
NLUUG - Open Systems. Open Standards
Become a member
and get discounts on conferences and more, see the NLUUG website!