dpkg-buildpackage -us -uc -ui -B dpkg-buildpackage: info: source package rpy2 dpkg-buildpackage: info: source version 3.5.16-1~bookwormcran.1 dpkg-buildpackage: info: source distribution bookworm-cran dpkg-buildpackage: info: source changed by Johannes Ranke dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/home/jranke/git/r-backports/bookworm/rpy2-3.5.16' echo "Skipping" Skipping make[1]: Leaving directory '/home/jranke/git/r-backports/bookworm/rpy2-3.5.16' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/home/jranke/git/r-backports/bookworm/rpy2-3.5.16' dh_clean make[1]: Leaving directory '/home/jranke/git/r-backports/bookworm/rpy2-3.5.16' debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config cffi mode is CFFI_MODE.ANY Looking for R home with: R RHOME R home found: /usr/lib/R R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags ['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS ['-lblas', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags ['-I/usr/share/R/include', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn ['lib', ''] cffi mode is CFFI_MODE.ANY Looking for R home with: R RHOME R home found: /usr/lib/R R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags ['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS ['-lblas', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags ['-I/usr/share/R/include', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn ['lib', ''] /usr/lib/python3/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build cffi mode is CFFI_MODE.ANY Looking for R home with: R RHOME R home found: /usr/lib/R R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags ['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS ['-lblas', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags ['-I/usr/share/R/include', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn ['lib', ''] cffi mode is CFFI_MODE.ANY Looking for R home with: R RHOME R home found: /usr/lib/R R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags ['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS ['-lblas', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags ['-I/usr/share/R/include', ''] R exec path: /usr/lib/R/bin/R Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn ['lib', ''] /usr/lib/python3/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running build cffi mode: CFFI_MODE.ANY running build_py file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2 copying rpy2/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2 copying rpy2/_rinterface_cffi_build.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2 copying rpy2/rinterface.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2 copying rpy2/situation.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2 creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rlike copying rpy2/rlike/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rlike copying rpy2/rlike/container.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rlike copying rpy2/rlike/functional.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rlike copying rpy2/rlike/indexing.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rlike creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/_rinterface_capi.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/bufferprotocol.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/callbacks.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/conversion.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/embedded.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/embedded_mswin.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/ffi_proxy.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/memorymanagement.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/na_values.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/openrlib.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/sexp.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/constants.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/conversion.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/environments.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/functions.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/help.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/language.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/methods.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/numpy2ri.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/packages.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/packages_utils.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/pandas2ri.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/robject.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects copying rpy2/robjects/vectors.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/dbplyr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/dplyr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/ggplot2.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/grdevices.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/grid.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib copying rpy2/robjects/lib/tidyr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/robjects/lib creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/interactive copying rpy2/interactive/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/interactive copying rpy2/interactive/packages.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/interactive copying rpy2/interactive/process_revents.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/interactive creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/ipython copying rpy2/ipython/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/ipython copying rpy2/ipython/ggplot.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/ipython copying rpy2/ipython/html.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/ipython copying rpy2/ipython/rmagic.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/ipython creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests copying rpy2/tests/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests copying rpy2/tests/utils.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_bufferprotocol.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_callbacks.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_conversion.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_embedded_r.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_endr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_environment.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_externalptr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_functions.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_memorymanagement.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_noinitialization.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_openrlib.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_sexp.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_symbol.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_threading.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_bool.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_byte.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_float.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_int.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_lang.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_list.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_numpy.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_pairlist.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_str.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vectors.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_na.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface copying rpy2/tests/rinterface/test_vector_complex.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rlike copying rpy2/tests/rlike/test_container.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rlike copying rpy2/tests/rlike/test_functional.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rlike copying rpy2/tests/rlike/test_indexing.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/rlike creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_array.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_conversion.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_dataframe.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_environment.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_formula.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_function.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_help.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_language.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_methods.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_packages.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_packages_utils.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_pandas_conversions.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_robjects.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_rs4.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_serialization.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_translated_function.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_vector.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_vector_extractdelegator.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_vector_factor.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_conversion_numpy.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects copying rpy2/tests/robjects/test_vector_datetime.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/ipython copying rpy2/tests/ipython/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/ipython copying rpy2/tests/ipython/test_ggplot.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/ipython copying rpy2/tests/ipython/test_html.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/ipython copying rpy2/tests/ipython/test_rmagic.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/ipython creating /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/__init__.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/test_dbplyr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/test_dplyr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/test_ggplot2.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/test_grdevices.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/test_grid.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib copying rpy2/tests/robjects/lib/test_tidyr.py -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib running egg_info writing rpy2.egg-info/PKG-INFO writing dependency_links to rpy2.egg-info/dependency_links.txt writing requirements to rpy2.egg-info/requires.txt writing top-level names to rpy2.egg-info/top_level.txt reading manifest file 'rpy2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README' anywhere in distribution warning: no previously-included files matching '*patch*' found anywhere in distribution warning: no previously-included files matching '*diff*' found anywhere in distribution warning: no previously-included files matching '.hg' found anywhere in distribution warning: no files found matching 'MANIFEST' warning: no files found matching '_rinterface_cffi_build' warning: no files found matching 'rpy/__init__.py' warning: no files found matching 'rpy/situation.py' warning: no files found matching '*.py' under directory 'rpy/robjects' warning: no files found matching '*.py' under directory 'rpy/ipython' warning: no files found matching '*.py' under directory 'rpy/interactive' warning: no files found matching '*.py' under directory 'rpy/rlike' no previously-included directories found matching 'dist' warning: no files found matching 'doc/source/rpy2_logo.png' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'rpy2.egg-info/SOURCES.txt' copying rpy2/rinterface_lib/R_API.h -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/R_API_eventloop.h -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/R_API_eventloop.c -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/RPY2.h -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib copying rpy2/rinterface_lib/_bufferprotocol.c -> /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found generating cffi module '/home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/_rinterface_cffi_abi.py' running build_ext generating cffi module 'build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.c' creating build creating build/temp.linux-x86_64-cpython-311 building 'rpy2.rinterface_lib._bufferprotocol' extension creating build/temp.linux-x86_64-cpython-311/rpy2 creating build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bookworm/rpy2-3.5.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c rpy2/rinterface_lib/_bufferprotocol.c -o build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bookworm/rpy2-3.5.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.o -L/usr/lib/x86_64-linux-gnu -o /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib/_bufferprotocol.cpython-311-x86_64-linux-gnu.so building '_rinterface_cffi_api' extension creating build/temp.linux-x86_64-cpython-311/build creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bookworm/rpy2-3.5.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DRPY2_RLEN_LONG=True -DR_INTERFACE_PTRS=True -Irpy2/rinterface_lib/ -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.o -std=c99 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bookworm/rpy2-3.5.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.o -L/usr/lib/R/lib -L/usr/lib/x86_64-linux-gnu -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n -lblas -o /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build/_rinterface_cffi_api.abi3.so -Wl,--export-dynamic -fopenmp -Wl,-z,relro -Wl,-rpath,/usr/lib/R/lib --- CFFI_MODE.ANY ABI mode interface built. API mode interface built. To change the API/ABI build mode, set or modify the environment variable RPY2_CFFI_MODE. dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:240: cd /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /home/jranke/git/r-backports/bookworm/rpy2-3.5.16, configfile: pyproject.toml collected 857 items rpy2/tests/ipython/test_ggplot.py s [ 0%] rpy2/tests/ipython/test_html.py ssssssss [ 1%] rpy2/tests/ipython/test_rmagic.py ssssssssssssssssssssss [ 3%] rpy2/tests/rinterface/test_bufferprotocol.py ... [ 3%] rpy2/tests/rinterface/test_callbacks.py ...................s... [ 6%] rpy2/tests/rinterface/test_conversion.py . [ 6%] rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault Current thread 0x00007ffff7cac040 (most recent call first): Segmentation fault (core dumped) E: pybuild pybuild:388: test: plugin distutils failed with: exit code=139: cd /home/jranke/git/r-backports/bookworm/rpy2-3.5.16/.pybuild/cpython3_3.11/build; python3.11 -m pytest dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13 make: *** [debian/rules:19: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2