dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building survival using existing ./survival_3.5-7.orig.tar.gz dpkg-source: warning: ignoring deletion of file noweb/concordance.Rnw.orig, use --include-removal to override dpkg-source: warning: ignoring deletion of file inst/NEWS.Rd.orig, use --include-removal to override dpkg-source: info: building survival in survival_3.5-7-1~bookwormcran.0.debian.tar.xz dpkg-source: info: building survival in survival_3.5-7-1~bookwormcran.0.dsc I: Generating source changes file for original dsc dpkg-genchanges: warning: the current version (3.5-7-1~bookwormcran.0) is earlier than the previous one (3.5-7-1) dpkg-genchanges: info: including full source code in upload W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 2 07:38:13 CET 2023 I: pbuilder-time-stamp: 1698907093 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-i386-base.tgz] I: copying local configuration I: Installing apt-lines I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Copying source file I: copying [../survival_3.5-7-1~bookwormcran.0.dsc] I: copying [../survival_3.5-7.orig.tar.gz] I: copying [../survival_3.5-7-1~bookwormcran.0.debian.tar.xz] I: Extracting source dpkg-source: warning: extracting unsigned source package (survival_3.5-7-1~bookwormcran.0.dsc) dpkg-source: info: extracting survival in survival-3.5-7 dpkg-source: info: unpacking survival_3.5-7.orig.tar.gz dpkg-source: info: unpacking survival_3.5-7-1~bookwormcran.0.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), r-base-dev (>= 4.3.1), dh-r, r-cran-matrix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12433 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev (>= 4.3.1); however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 173 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/104 MB of archives. After unpacking 312 MB will be used. Writing extended state information... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12433 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.11-1~deb12u1_i386.deb ... Unpacking openssl (3.0.11-1~deb12u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. 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Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../019-dctrl-tools_2.24-3_i386.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. 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Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../027-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../029-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.3~deb12u1_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_i386.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_i386.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:i386. Preparing to unpack .../037-libpaper1_1.1.29_i386.deb ... Unpacking libpaper1:i386 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_i386.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../040-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../041-libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../042-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../043-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../044-libfreetype6_2.12.1+dfsg-5_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ... 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Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../052-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.4-2+deb12u1_all.deb ... Unpacking libx11-data (2:1.8.4-2+deb12u1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../054-libx11-6_2%3a1.8.4-2+deb12u1_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2+deb12u1) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../055-libxcb-render0_1.15-1_i386.deb ... Unpacking libxcb-render0:i386 (1.15-1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../056-libxcb-shm0_1.15-1_i386.deb ... Unpacking libxcb-shm0:i386 (1.15-1) ... 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Setting up libclone-perl:i386 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:i386 (2.74.6-2) ... No schema files found: doing nothing. Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:i386 (2.1-6.1) ... Setting up libpcre2-16-0:i386 (10.42-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:i386 (0.30-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:i386 (10.42-1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libpkgconf3:i386 (1.8.1-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.4-2+deb12u1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.4-4) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:i386 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up libb-hooks-op-check-perl:i386 (0.22-2+b1) ... Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:i386 (1.2.4-0.2+deb12u1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up liblzma-dev:i386 (5.4.1-0.2) ... Setting up libsub-name-perl:i386 (0.26-2+b1) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up libpcre2-posix3:i386 (10.42-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:i386 (4.5.0-6) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up openssl (3.0.11-1~deb12u1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.4-4) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:i386 (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libpng-dev:i386 (1.6.39-2) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libgfortran-12-dev:i386 (12.2.0-14) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:i386 (8.2-1.3) ... Setting up libdevel-callchecker-perl:i386 (0.008-2) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up pkgconf:i386 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gfortran-12 (12.2.0-14) ... Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up liblapack-dev:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:i386 (7.88.1-10+deb12u3) ... Setting up libx11-6:i386 (2:1.8.4-2+deb12u1) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:i386 (0.015-2+b1) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-10+deb12u3) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxft2:i386 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:i386 (8.6.13-2) ... Setting up libwww-curl-perl:i386 (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.3.2-1~bookwormcran.0) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-45-3) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-base-dev (4.3.2-1~bookwormcran.0) ... Setting up libmoose-perl:i386 (2.2203-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20230121) ... Processing triggers for libc-bin (2.36-9+deb12u2) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/97.9 kB of archives. After this operation, 358 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19524 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.31-1.2_i386.deb ... Unpacking libfakeroot:i386 (1.31-1.2) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.31-1.2_i386.deb ... Unpacking fakeroot (1.31-1.2) ... Setting up libfakeroot:i386 (1.31-1.2) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.36-9+deb12u2) ... I: Copying back the cached apt archive contents I: Building the package I: Running cd /build/survival-3.5-7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -sa && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-genchanges -S '-sa' > ../survival_3.5-7-1~bookwormcran.0_source.changes dpkg-buildpackage: info: source package survival dpkg-buildpackage: info: source version 3.5-7-1~bookwormcran.0 dpkg-buildpackage: info: source distribution bookworm-cran dpkg-buildpackage: info: source changed by Johannes Ranke dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building survival using existing ./survival_3.5-7.orig.tar.gz dpkg-source: warning: ignoring deletion of file inst/NEWS.Rd.orig, use --include-removal to override dpkg-source: warning: ignoring deletion of file noweb/concordance.Rnw.orig, use --include-removal to override dpkg-source: info: building survival in survival_3.5-7-1~bookwormcran.0.debian.tar.xz dpkg-source: info: building survival in survival_3.5-7-1~bookwormcran.0.dsc debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-survival/ -O--buildsystem=R I: R Package: survival Version: 3.5-7 I: R package with Priority: recommended, installing in usr/lib/R/library I: Building using R version 4.3.2-1~bookwormcran.0 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 02 Nov 2023 07:38:10 +0100 mkdir -p /build/survival-3.5-7/debian/r-cran-survival/usr/lib/R/library R CMD INSTALL -l /build/survival-3.5-7/debian/r-cran-survival/usr/lib/R/library --clean . "--built-timestamp='Thu, 02 Nov 2023 07:38:10 +0100'" * installing *source* package 'survival' ... files 'inst/NEWS.Rd.orig', 'noweb/concordance.Rnw.orig' are missing ** using staged installation ** libs using C compiler: 'gcc (Debian 12.2.0-14) 12.2.0' make[1]: Entering directory '/build/survival-3.5-7/src' gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agexact.c -o agexact.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agfit4.c -o agfit4.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agfit5.c -o agfit5.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agmart.c -o agmart.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agmart3.c -o agmart3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agscore2.c -o agscore2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agscore3.c -o agscore3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agsurv4.c -o agsurv4.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c agsurv5.c -o agsurv5.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cdecomp.c -o cdecomp.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c chinv2.c -o chinv2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c chinv3.c -o chinv3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cholesky2.c -o cholesky2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cholesky3.c -o cholesky3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cholesky5.c -o cholesky5.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c chsolve2.c -o chsolve2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c chsolve3.c -o chsolve3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c chsolve5.c -o chsolve5.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c collapse.c -o collapse.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c concordance1.c -o concordance1.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c concordance3.c -o concordance3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c concordance5.c -o concordance5.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c cox_Rcallback.c -o cox_Rcallback.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxcount1.c -o coxcount1.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxdetail.c -o coxdetail.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxexact.c -o coxexact.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxfit5.c -o coxfit5.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxfit6.c -o coxfit6.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxfit7.c -o coxfit7.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxmart.c -o coxmart.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxmart2.c -o coxmart2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxph_wtest.c -o coxph_wtest.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxsafe.c -o coxsafe.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxscho.c -o coxscho.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxscore2.c -o coxscore2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxsurv1.c -o coxsurv1.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxsurv2.c -o coxsurv2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxsurv3.c -o coxsurv3.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c coxsurv4.c -o coxsurv4.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c dmatrix.c -o dmatrix.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c doloop.c -o doloop.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c fastkm.c -o fastkm.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c finegray.c -o finegray.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c gchol.c -o gchol.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c multicheck.c -o multicheck.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c norisk.c -o norisk.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c pyears1.c -o pyears1.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c pyears2.c -o pyears2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c pyears3b.c -o pyears3b.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c pystep.c -o pystep.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c residcsum.c -o residcsum.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survConcordance.c -o survConcordance.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survdiff2.c -o survdiff2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survfit4.c -o survfit4.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survfitci.c -o survfitci.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survfitkm.c -o survfitkm.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survfitresid.c -o survfitresid.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survpenal.c -o survpenal.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survreg6.c -o survreg6.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survreg7.c -o survreg7.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survregc1.c -o survregc1.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survregc2.c -o survregc2.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c survsplit.c -o survsplit.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c tmerge.c -o tmerge.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c zph1.c -o zph1.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c zph2.c -o zph2.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxfit7.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/survival-3.5-7/src' make[1]: Entering directory '/build/survival-3.5-7/src' make[1]: Leaving directory '/build/survival-3.5-7/src' installing to /build/survival-3.5-7/debian/r-cran-survival/usr/lib/R/library/00LOCK-survival-3.5-7/00new/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survival) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-matrix for Imports:Matrix I: Use r-cran-survival as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-survival-dbgsym' in '../r-cran-survival-dbgsym_3.5-7-1~bookwormcran.0_i386.deb'. dpkg-deb: building package 'r-cran-survival' in '../r-cran-survival_3.5-7-1~bookwormcran.0_i386.deb'. dpkg-genbuildinfo -O../survival_3.5-7-1~bookwormcran.0_i386.buildinfo dpkg-genchanges -sa -O../survival_3.5-7-1~bookwormcran.0_i386.changes dpkg-genchanges: warning: the current version (3.5-7-1~bookwormcran.0) is earlier than the previous one (3.5-7-1) dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload (original source is included) dpkg-genchanges: warning: the current version (3.5-7-1~bookwormcran.0) is earlier than the previous one (3.5-7-1) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: Copying back the cached apt archive contents I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env  I: removing directory /var/cache/pbuilder/bookworm-i386/build/494965 and its subdirectories I: Current time: Thu Nov 2 07:40:27 CET 2023 I: pbuilder-time-stamp: 1698907227