CRAN Package Check Results for Maintainer ‘Thibaut Jombart <thibautjombart at gmail.com>’

Last updated on 2024-11-23 09:49:54 CET.

Package ERROR NOTE OK
earlyR 13
epitrix 3 10
projections 5 5 3
trendeval 3 10
trending 1 12

Package earlyR

Current CRAN status: NOTE: 13

Version: 0.0.5
Check: Rd files
Result: NOTE checkRd: (-1) plot.earlyR.Rd:34-46: Lost braces 34 | if (require(incidence)) { | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.0.5
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package epitrix

Current CRAN status: NOTE: 3, OK: 10

Version: 0.4.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: fit_disc_gamma.Rd: distcrete gamma_tools.Rd: distcrete Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package projections

Current CRAN status: ERROR: 5, NOTE: 5, OK: 3

Version: 0.6.0
Check: Rd files
Result: NOTE checkRd: (-1) summary.projections.Rd:33-48: Lost braces 33 | if (require(incidence)) { | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.6.0
Check: tests
Result: ERROR Running ‘testthat.R’ [7s/8s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(distcrete) > library(incidence) > library(projections) > library(outbreaks) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > > test_check("projections") Saving 7 x 7 in image [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-accessors.R:2:5', 'test-accessors.R:21:5', 'test-build_projections.R:2:5', 'test-build_projections.R:27:5', 'test-build_projections.R:50:5', 'test-build_projections.R:69:5', 'test-conversion.R:2:5', 'test-cumulate.R:2:3', 'test-internals.R:2:5', 'test-plots.R:31:3', 'test-plots.R:107:3', 'test-print.R:2:3', 'test-project.R:67:3', 'test-project.R:137:3', 'test-project.R:196:3', 'test-project.R:265:3', 'test-subset.R:2:5', 'test-subset.R:41:5', 'test-subset.R:75:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-project.R:15:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:36:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") + 0:1 (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:58:3'): Projections can be performed for a single day and single simulation ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] Deleting unused snapshots: • plots/basic-example-plot.svg • plots/evd-proj-box-no-outliers.svg • plots/evd-proj-box-only.svg • plots/evd-proj-full-red-ribbon-narrow-range.svg • plots/evd-proj-no-box-custom-lines.svg • plots/evd-proj-no-ribbon.svg • plots/evd-proj-red-box.svg • plots/evd-proj-red-ribbon.svg • plots/evd-proj-ribbon-only.svg • plots/evd-proj-with-incidence-incidence-and-custom.svg • plots/evd-proj-with-incidence-incidence-box-only.svg • plots/evd-proj-with-incidence-incidence-no-box.svg • plots/evd-proj-with-incidence-incidence.svg • plots/evd-proj.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.6.0
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(distcrete) > library(incidence) > library(projections) > library(outbreaks) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > > test_check("projections") Saving 7 x 7 in image [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-accessors.R:2:5', 'test-accessors.R:21:5', 'test-build_projections.R:2:5', 'test-build_projections.R:27:5', 'test-build_projections.R:50:5', 'test-build_projections.R:69:5', 'test-conversion.R:2:5', 'test-cumulate.R:2:3', 'test-internals.R:2:5', 'test-plots.R:31:3', 'test-plots.R:107:3', 'test-print.R:2:3', 'test-project.R:67:3', 'test-project.R:137:3', 'test-project.R:196:3', 'test-project.R:265:3', 'test-subset.R:2:5', 'test-subset.R:41:5', 'test-subset.R:75:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-project.R:15:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:36:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") + 0:1 (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:58:3'): Projections can be performed for a single day and single simulation ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] Deleting unused snapshots: • plots/basic-example-plot.svg • plots/evd-proj-box-no-outliers.svg • plots/evd-proj-box-only.svg • plots/evd-proj-full-red-ribbon-narrow-range.svg • plots/evd-proj-no-box-custom-lines.svg • plots/evd-proj-no-ribbon.svg • plots/evd-proj-red-box.svg • plots/evd-proj-red-ribbon.svg • plots/evd-proj-ribbon-only.svg • plots/evd-proj-with-incidence-incidence-and-custom.svg • plots/evd-proj-with-incidence-incidence-box-only.svg • plots/evd-proj-with-incidence-incidence-no-box.svg • plots/evd-proj-with-incidence-incidence.svg • plots/evd-proj.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.6.0
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/14s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(distcrete) > library(incidence) > library(projections) > library(outbreaks) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > > test_check("projections") Saving 7 x 7 in image [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-accessors.R:2:5', 'test-accessors.R:21:5', 'test-build_projections.R:2:5', 'test-build_projections.R:27:5', 'test-build_projections.R:50:5', 'test-build_projections.R:69:5', 'test-conversion.R:2:5', 'test-cumulate.R:2:3', 'test-internals.R:2:5', 'test-plots.R:31:3', 'test-plots.R:107:3', 'test-print.R:2:3', 'test-project.R:67:3', 'test-project.R:137:3', 'test-project.R:196:3', 'test-project.R:265:3', 'test-subset.R:2:5', 'test-subset.R:41:5', 'test-subset.R:75:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-project.R:15:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:36:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") + 0:1 (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:58:3'): Projections can be performed for a single day and single simulation ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] Deleting unused snapshots: • plots/basic-example-plot.svg • plots/evd-proj-box-no-outliers.svg • plots/evd-proj-box-only.svg • plots/evd-proj-full-red-ribbon-narrow-range.svg • plots/evd-proj-no-box-custom-lines.svg • plots/evd-proj-no-ribbon.svg • plots/evd-proj-red-box.svg • plots/evd-proj-red-ribbon.svg • plots/evd-proj-ribbon-only.svg • plots/evd-proj-with-incidence-incidence-and-custom.svg • plots/evd-proj-with-incidence-incidence-box-only.svg • plots/evd-proj-with-incidence-incidence-no-box.svg • plots/evd-proj-with-incidence-incidence.svg • plots/evd-proj.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.6.0
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(distcrete) > library(incidence) > library(projections) > library(outbreaks) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > > test_check("projections") Saving 7 x 7 in image [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-accessors.R:2:5', 'test-accessors.R:21:5', 'test-build_projections.R:2:5', 'test-build_projections.R:27:5', 'test-build_projections.R:50:5', 'test-build_projections.R:69:5', 'test-conversion.R:2:5', 'test-cumulate.R:2:3', 'test-internals.R:2:5', 'test-plots.R:31:3', 'test-plots.R:107:3', 'test-print.R:2:3', 'test-project.R:67:3', 'test-project.R:137:3', 'test-project.R:196:3', 'test-project.R:265:3', 'test-subset.R:2:5', 'test-subset.R:41:5', 'test-subset.R:75:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-project.R:15:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:36:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") + 0:1 (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:58:3'): Projections can be performed for a single day and single simulation ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] Deleting unused snapshots: • plots/basic-example-plot.svg • plots/evd-proj-box-no-outliers.svg • plots/evd-proj-box-only.svg • plots/evd-proj-full-red-ribbon-narrow-range.svg • plots/evd-proj-no-box-custom-lines.svg • plots/evd-proj-no-ribbon.svg • plots/evd-proj-red-box.svg • plots/evd-proj-red-ribbon.svg • plots/evd-proj-ribbon-only.svg • plots/evd-proj-with-incidence-incidence-and-custom.svg • plots/evd-proj-with-incidence-incidence-box-only.svg • plots/evd-proj-with-incidence-incidence-no-box.svg • plots/evd-proj-with-incidence-incidence.svg • plots/evd-proj.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.6.0
Check: tests
Result: ERROR Running 'testthat.R' [6s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(distcrete) > library(incidence) > library(projections) > library(outbreaks) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > > test_check("projections") Saving 7 x 7 in image [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-accessors.R:2:5', 'test-accessors.R:21:5', 'test-build_projections.R:2:5', 'test-build_projections.R:27:5', 'test-build_projections.R:50:5', 'test-build_projections.R:69:5', 'test-conversion.R:2:5', 'test-cumulate.R:2:3', 'test-internals.R:2:5', 'test-plots.R:31:3', 'test-plots.R:107:3', 'test-print.R:2:3', 'test-project.R:67:3', 'test-project.R:137:3', 'test-project.R:196:3', 'test-project.R:265:3', 'test-subset.R:2:5', 'test-subset.R:41:5', 'test-subset.R:75:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-project.R:15:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:36:3'): Projections can be performed for a single day ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") + 0:1 (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector ── Failure ('test-project.R:58:3'): Projections can be performed for a single day and single simulation ── get_dates(p) (`actual`) not identical to as.Date("2020-01-24") (`expected`). `actual` is an S3 object of class <Date>, an integer vector `expected` is an S3 object of class <Date>, a double vector [ FAIL 3 | WARN 0 | SKIP 19 | PASS 73 ] Deleting unused snapshots: • plots/basic-example-plot.svg • plots/evd-proj-box-no-outliers.svg • plots/evd-proj-box-only.svg • plots/evd-proj-full-red-ribbon-narrow-range.svg • plots/evd-proj-no-box-custom-lines.svg • plots/evd-proj-no-ribbon.svg • plots/evd-proj-red-box.svg • plots/evd-proj-red-ribbon.svg • plots/evd-proj-ribbon-only.svg • plots/evd-proj-with-incidence-incidence-and-custom.svg • plots/evd-proj-with-incidence-incidence-box-only.svg • plots/evd-proj-with-incidence-incidence-no-box.svg • plots/evd-proj-with-incidence-incidence.svg • plots/evd-proj.svg Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Package trendeval

Current CRAN status: NOTE: 3, OK: 10

Version: 0.1.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: calculate_mae.Rd: trending_model calculate_rmse.Rd: trending_model calculate_rsq.Rd: trending_model Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Current CRAN status: NOTE: 1, OK: 12

Version: 0.1.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘brms’ Flavor: r-oldrel-macos-x86_64

Version: 0.1.0
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘brms’ Flavor: r-oldrel-macos-x86_64