#Maintainer: Ejis <ejis@mailoo.org>

#Mandatory
category=extra/l
pkgname=MUMmer
pkgver=3.22
zenver=64
pkgrel=1
arch=i486
source=("http://downloads.sourceforge.net/sourceforge/mummer/${pkgname}${pkgver}.tar.gz")
sourcetemplate=http://zenwalk.pinguix.com/user-accounts/ejis/$category/$pkgname/$zenver

slackdesc=\
(
#|-----handy-ruler------------------------------------------------------|
"$pkgname"
"MUMmer is a modular system for the rapid whole genome alignment of"
"finished or draft sequence. This package provides an efficient suffix"
"tree library, seed-and-extend alignment, SNP detection, repeat"
"detection, and visualization tools."
)


build() {
		cd $startdir/src/${pkgname}${pkgver}
		
		sed -i "s:-O3:-O2 -march=i486 -mtune=i686:g" Makefile
		
		make -j2 || return 1
		make install DESTDIR=$startdir/pkg
		
		
		mkdir -p $startdir/pkg/usr/doc/$pkgname-$pkgver
		mkdir -p $startdir/pkg/usr/share/mummer
		mkdir $startdir/pkg/usr/lib
		mkdir $startdir/pkg/usr/bin
		
		mv ./docs/* $startdir/pkg/usr/doc/$pkgname-$pkgver/
		mv ./scripts/* $startdir/pkg/usr/share/mummer/
		
		mv ./src/kurtz/libbasedir/*.a $startdir/pkg/usr/lib/
		mv ./src/kurtz/streesrc/*.a $startdir/pkg/usr/lib/
		
		mv ./exact-tandems $startdir/pkg/usr/bin/
		mv ./run-mummer1 $startdir/pkg/usr/bin/
		mv ./run-mummer3 $startdir/pkg/usr/bin/
		mv ./annotate $startdir/pkg/usr/bin/
		mv ./combineMUMs $startdir/pkg/usr/bin/
		mv ./delta-filter $startdir/pkg/usr/bin/
		mv ./gaps $startdir/pkg/usr/bin/
		mv ./mgaps $startdir/pkg/usr/bin/
		mv ./mummer $startdir/pkg/usr/bin/
		mv ./repeat-match $startdir/pkg/usr/bin/
		mv ./show-aligns $startdir/pkg/usr/bin/
		mv ./show-coords $startdir/pkg/usr/bin/
		mv ./show-diff $startdir/pkg/usr/bin/
		mv ./show-snps $startdir/pkg/usr/bin/
		mv ./show-tiling $startdir/pkg/usr/bin/
		mv ./dnadiff $startdir/pkg/usr/bin/
		mv ./mapview $startdir/pkg/usr/bin/
		mv ./mummerplot $startdir/pkg/usr/bin/
		mv ./nucmer $startdir/pkg/usr/bin/
		mv ./nucmer2xfig $startdir/pkg/usr/bin/
		mv ./promer $startdir/pkg/usr/bin/
} 
 
#Optional
docs=('authors' 'copying' 'changelog' 'install' 'news' 'readme')
#options=('noextract')
url="http://mummer.sourceforge.net/"
#extradepends=('dep1' 'dep2' 'dep3')
#lessdepends=('x11-driver-nvidia' 'x11-driver-nvidia-rt') 
#dotnew=('etc/thing' 'etc/foo' 'etc/bar')
#CFLAGS="-03"
#CXXFLAGS="-03"

#doinst() {
		
#}