43 #ifndef PANZER_STK_MODEL_EVALUATOR_FACTORY_T_HPP 44 #define PANZER_STK_MODEL_EVALUATOR_FACTORY_T_HPP 46 #include "Thyra_ModelEvaluator.hpp" 47 #include "Teuchos_Assert.hpp" 48 #include "Teuchos_as.hpp" 49 #include "Teuchos_DefaultMpiComm.hpp" 50 #include "Teuchos_AbstractFactoryStd.hpp" 52 #include "PanzerAdaptersSTK_config.hpp" 59 #include "Panzer_DOFManagerFactory.hpp" 61 #include "Panzer_BlockedDOFManagerFactory.hpp" 63 #include "Panzer_EpetraLinearObjFactory.hpp" 64 #include "Panzer_TpetraLinearObjFactory.hpp" 106 #include "Thyra_EpetraModelEvaluator.hpp" 107 #include "Piro_ConfigDefs.hpp" 108 #include "Piro_NOXSolver.hpp" 109 #include "Piro_LOCASolver.hpp" 110 #include "Piro_RythmosSolver.hpp" 116 template<
typename ScalarT>
123 if(!paramList->sublist(
"Initial Conditions").isType<
bool>(
"Zero Initial Conditions"))
124 paramList->sublist(
"Initial Conditions").set<
bool>(
"Zero Initial Conditions",
false);
126 paramList->sublist(
"Initial Conditions").sublist(
"Vector File").validateParametersAndSetDefaults(
129 this->setMyParamList(paramList);
132 template<
typename ScalarT>
135 static Teuchos::RCP<const Teuchos::ParameterList> validPL;
136 if (is_null(validPL)) {
137 Teuchos::RCP<Teuchos::ParameterList> pl = Teuchos::rcp(
new Teuchos::ParameterList());
139 pl->sublist(
"Physics Blocks").disableRecursiveValidation();
140 pl->sublist(
"Closure Models").disableRecursiveValidation();
141 pl->sublist(
"Boundary Conditions").disableRecursiveValidation();
142 pl->sublist(
"Solution Control").disableRecursiveValidation();
143 pl->set<
bool>(
"Use Discrete Adjoint",
false);
145 pl->sublist(
"Mesh").disableRecursiveValidation();
147 pl->sublist(
"Initial Conditions").set<
bool>(
"Zero Initial Conditions",
false);
148 pl->sublist(
"Initial Conditions").sublist(
"Transient Parameters").disableRecursiveValidation();
149 pl->sublist(
"Initial Conditions").sublist(
"Vector File");
150 pl->sublist(
"Initial Conditions").sublist(
"Vector File").set(
"File Name",
"");
151 pl->sublist(
"Initial Conditions").sublist(
"Vector File").set<
bool>(
"Enabled",
false);
152 pl->sublist(
"Initial Conditions").disableRecursiveValidation();
154 pl->sublist(
"Output").set(
"File Name",
"panzer.exo");
155 pl->sublist(
"Output").set(
"Write to Exodus",
true);
156 pl->sublist(
"Output").sublist(
"Cell Average Quantities").disableRecursiveValidation();
157 pl->sublist(
"Output").sublist(
"Cell Quantities").disableRecursiveValidation();
158 pl->sublist(
"Output").sublist(
"Cell Average Vectors").disableRecursiveValidation();
159 pl->sublist(
"Output").sublist(
"Nodal Quantities").disableRecursiveValidation();
160 pl->sublist(
"Output").sublist(
"Allocate Nodal Quantities").disableRecursiveValidation();
164 Teuchos::ParameterList& p = pl->sublist(
"Assembly");
165 p.set<
int>(
"Workset Size", 1);
166 p.set<
int>(
"Default Integration Order",-1);
167 p.set<std::string>(
"Field Order",
"");
168 p.set<std::string>(
"Auxiliary Field Order",
"");
169 p.set<
bool>(
"Use DOFManager FEI",
false);
170 p.set<
bool>(
"Load Balance DOFs",
false);
171 p.set<
bool>(
"Use Tpetra",
false);
172 p.set<
bool>(
"Use Epetra ME",
true);
173 p.set<
bool>(
"Lump Explicit Mass",
false);
174 p.set<
bool>(
"Constant Mass Matrix",
true);
175 p.set<
bool>(
"Apply Mass Matrix Inverse in Explicit Evaluator",
true);
176 p.set<
bool>(
"Use Conservative IMEX",
false);
177 p.set<
bool>(
"Compute Real Time Derivative",
false);
178 p.set<
bool>(
"Use Time Derivative in Explicit Model",
false);
179 p.set<
bool>(
"Compute Time Derivative at Time Step",
false);
180 p.set<Teuchos::RCP<const panzer::EquationSetFactory> >(
"Equation Set Factory", Teuchos::null);
181 p.set<Teuchos::RCP<const panzer::ClosureModelFactory_TemplateManager<panzer::Traits> > >(
"Closure Model Factory", Teuchos::null);
182 p.set<Teuchos::RCP<const panzer::BCStrategyFactory> >(
"BC Factory",Teuchos::null);
183 p.set<std::string>(
"Excluded Blocks",
"");
184 p.sublist(
"ALE").disableRecursiveValidation();
187 pl->sublist(
"Block ID to Physics ID Mapping").disableRecursiveValidation();
188 pl->sublist(
"Options").disableRecursiveValidation();
189 pl->sublist(
"Active Parameters").disableRecursiveValidation();
190 pl->sublist(
"Controls").disableRecursiveValidation();
191 pl->sublist(
"ALE").disableRecursiveValidation();
192 pl->sublist(
"User Data").disableRecursiveValidation();
193 pl->sublist(
"User Data").sublist(
"Panzer Data").disableRecursiveValidation();
201 bool hasInterfaceCondition(
const std::vector<panzer::BC>& bcs)
203 for (std::vector<panzer::BC>::const_iterator bcit = bcs.begin(); bcit != bcs.end(); ++bcit)
209 Teuchos::RCP<STKConnManager<int> >
212 const Teuchos::RCP<STKConnManager<int> > stk_conn_mgr =
213 Teuchos::rcp_dynamic_cast<STKConnManager<int> >(conn_mgr);
214 TEUCHOS_TEST_FOR_EXCEPTION(stk_conn_mgr.is_null(), std::logic_error,
215 "There are interface conditions, but the connection manager" 216 " does not support the necessary connections.");
220 void buildInterfaceConnections(
const std::vector<panzer::BC>& bcs,
223 const Teuchos::RCP<STKConnManager<int> > stk_conn_mgr = getSTKConnManager(conn_mgr);
224 for (std::vector<panzer::BC>::const_iterator bcit = bcs.begin(); bcit != bcs.end(); ++bcit)
226 stk_conn_mgr->associateElementsInSideset(bcit->sidesetID());
230 const Teuchos::RCP<Teuchos::Comm<int> >&
comm)
232 const Teuchos::RCP<STKConnManager<int> > stk_conn_mgr = getSTKConnManager(conn_mgr);
233 std::vector<std::string> sidesets = stk_conn_mgr->checkAssociateElementsInSidesets(*
comm);
234 if ( ! sidesets.empty()) {
235 std::stringstream ss;
237 for (std::size_t i = 0; i < sidesets.size(); ++i)
238 ss <<
" " << sidesets[i];
239 ss <<
" did not yield associations, but these sidesets correspond to BCT_Interface BCs.";
240 TEUCHOS_TEST_FOR_EXCEPTION(
true, std::logic_error, ss.str());
245 template<
typename ScalarT>
247 const Teuchos::RCP<panzer::GlobalData>&
global_data,
248 const Teuchos::RCP<const panzer::EquationSetFactory>& eqset_factory,
251 bool meConstructionOn)
253 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(this->getParameterList()), std::runtime_error,
254 "ParameterList must be set before objects can be built!");
256 TEUCHOS_ASSERT(nonnull(
comm));
274 Teuchos::ParameterList& p = *this->getNonconstParameterList();
277 Teuchos::ParameterList & mesh_params = p.sublist(
"Mesh");
278 Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
279 Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
280 Teuchos::ParameterList & output_list = p.sublist(
"Output");
282 Teuchos::ParameterList & user_data_params = p.sublist(
"User Data");
283 Teuchos::ParameterList & panzer_data_params = user_data_params.sublist(
"Panzer Data");
285 Teuchos::RCP<Teuchos::ParameterList> physics_block_plist = Teuchos::sublist(this->getMyNonconstParamList(),
"Physics Blocks");
288 std::size_t workset_size = Teuchos::as<std::size_t>(assembly_params.get<
int>(
"Workset Size"));
289 std::string field_order = assembly_params.get<std::string>(
"Field Order");
291 bool use_dofmanager_fei = assembly_params.get<
bool>(
"Use DOFManager FEI");
292 bool use_load_balance = assembly_params.get<
bool>(
"Load Balance DOFs");
293 bool useTpetra = assembly_params.get<
bool>(
"Use Tpetra");
294 bool useThyraME = !assembly_params.get<
bool>(
"Use Epetra ME");
298 bool is_transient = solncntl_params.get<std::string>(
"Piro Solver") ==
"Rythmos" ?
true :
false;
300 if (solncntl_params.get<std::string>(
"Piro Solver") ==
"NOX") {
301 if (solncntl_params.sublist(
"NOX").get<std::string>(
"Nonlinear Solver") ==
"Pseudo-Transient")
306 if (solncntl_params.get<std::string>(
"Piro Solver") ==
"LOCA") {
307 if (solncntl_params.sublist(
"LOCA").sublist(
"Stepper").get<
bool>(
"Compute Eigenvalues"))
310 m_is_transient = is_transient;
312 bool useDiscreteAdjoint = p.get<
bool>(
"Use Discrete Adjoint");
323 const Teuchos::RCP<const Teuchos::MpiComm<int> > mpi_comm =
324 Teuchos::rcp_dynamic_cast<
const Teuchos::MpiComm<int> >(
comm);
329 Teuchos::RCP<panzer_stk::STK_MeshFactory> mesh_factory = this->buildSTKMeshFactory(mesh_params);
330 Teuchos::RCP<panzer_stk::STK_Interface> mesh = mesh_factory->buildUncommitedMesh(*(mpi_comm->getRawMpiComm()));
333 m_eqset_factory = eqset_factory;
338 std::vector<Teuchos::RCP<panzer::PhysicsBlock> > physicsBlocks;
341 std::map<std::string,std::string> block_ids_to_physics_ids;
345 std::map<std::string,Teuchos::RCP<const shards::CellTopology> > block_ids_to_cell_topo;
346 for(std::map<std::string,std::string>::const_iterator itr=block_ids_to_physics_ids.begin();
347 itr!=block_ids_to_physics_ids.end();++itr) {
348 block_ids_to_cell_topo[itr->first] = mesh->getCellTopology(itr->first);
349 TEUCHOS_ASSERT(block_ids_to_cell_topo[itr->first]!=Teuchos::null);
354 panzer::buildPhysicsBlocks(block_ids_to_physics_ids,
355 block_ids_to_cell_topo,
357 assembly_params.get<
int>(
"Default Integration Order"),
363 m_physics_blocks = physicsBlocks;
368 addUserFieldsToMesh(*mesh,output_list);
375 this->finalizeMeshConstruction(*mesh_factory,physicsBlocks,*mpi_comm,*mesh);
377 fout <<
"*****************************************\n\n";
378 fout <<
"Element block exception, could not finalize the mesh, printing block and sideset information:\n";
380 mesh->printMetaData(fout);
386 fout <<
"*****************************************\n\n";
387 fout <<
"Sideset exception, could not finalize the mesh, printing block and sideset information:\n";
389 mesh->printMetaData(fout);
397 if(p.sublist(
"Output").get<
bool>(
"Write to Exodus"))
398 mesh->setupTransientExodusFile(p.sublist(
"Output").get<std::string>(
"File Name"));
402 Teuchos::RCP<panzer_stk::WorksetFactory> wkstFactory;
403 if(m_user_wkst_factory==Teuchos::null)
406 wkstFactory = m_user_wkst_factory;
409 wkstFactory->setMesh(mesh);
413 std::vector<panzer::BC> bcs;
414 panzer::buildBCs(bcs, p.sublist(
"Boundary Conditions"),
global_data);
419 Teuchos::RCP<panzer::ConnManagerBase<int> > conn_manager;
424 m_conn_manager = conn_manager;
429 Teuchos::RCP<panzer::LinearObjFactory<panzer::Traits> > linObjFactory;
430 Teuchos::RCP<panzer::UniqueGlobalIndexerBase> globalIndexer;
432 std::string loadBalanceString =
"";
433 bool blockedAssembly =
false;
436 const Teuchos::RCP<panzer::ConnManager<int,int> > conn_manager_int
440 blockedAssembly =
true;
445 Teuchos::RCP<panzer::UniqueGlobalIndexer<int,std::pair<int,int> > > dofManager
446 = globalIndexerFactory.
buildUniqueGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager_int,field_order);
447 globalIndexer = dofManager;
449 Teuchos::RCP<panzer::BlockedEpetraLinearObjFactory<panzer::Traits,int> > bloLinObjFactory
454 const std::string excludedBlocks = assembly_params.get<std::string>(
"Excluded Blocks");
455 std::vector<std::string> stringPairs;
457 for(std::size_t i=0;i<stringPairs.size();i++) {
458 std::vector<std::string> sPair;
459 std::vector<int> iPair;
463 TEUCHOS_TEST_FOR_EXCEPTION(iPair.size()!=2,std::logic_error,
464 "Input Error: The correct format for \"Excluded Blocks\" parameter in \"Assembly\" sub list is:\n" 465 " <int>,<int>; <int>,<int>; ...; <int>,<int>\n" 466 "Failure on string pair " << stringPairs[i] <<
"!");
468 bloLinObjFactory->addExcludedPair(iPair[0],iPair[1]);
471 linObjFactory = bloLinObjFactory;
477 const Teuchos::RCP<panzer::ConnManager<int,panzer::Ordinal64> > conn_manager_long
481 blockedAssembly =
true;
483 TEUCHOS_ASSERT(!use_dofmanager_fei);
487 Teuchos::RCP<panzer::UniqueGlobalIndexer<int,std::pair<int,panzer::Ordinal64> > > dofManager
488 = globalIndexerFactory.
buildUniqueGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager_long,field_order);
489 globalIndexer = dofManager;
491 Teuchos::RCP<panzer::BlockedTpetraLinearObjFactory<panzer::Traits,double,int,panzer::Ordinal64> > bloLinObjFactory
496 const std::string excludedBlocks = assembly_params.get<std::string>(
"Excluded Blocks");
497 std::vector<std::string> stringPairs;
499 for(std::size_t i=0;i<stringPairs.size();i++) {
500 std::vector<std::string> sPair;
501 std::vector<int> iPair;
505 TEUCHOS_TEST_FOR_EXCEPTION(iPair.size()!=2,std::logic_error,
506 "Input Error: The correct format for \"Excluded Blocks\" parameter in \"Assembly\" sub list is:\n" 507 " <int>,<int>; <int>,<int>; ...; <int>,<int>\n" 508 "Failure on string pair " << stringPairs[i] <<
"!");
510 bloLinObjFactory->addExcludedPair(iPair[0],iPair[1]);
513 linObjFactory = bloLinObjFactory;
519 const Teuchos::RCP<panzer::ConnManager<int,panzer::Ordinal64> > conn_manager_long
524 TEUCHOS_ASSERT(!use_dofmanager_fei);
528 Teuchos::RCP<panzer::UniqueGlobalIndexer<int,panzer::Ordinal64> > dofManager
529 = globalIndexerFactory.
buildUniqueGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager_long,field_order);
530 globalIndexer = dofManager;
532 TEUCHOS_ASSERT(!useDiscreteAdjoint);
539 const bool has_interface_condition = hasInterfaceCondition(bcs);
540 if (has_interface_condition)
541 buildInterfaceConnections(bcs, conn_manager);
543 const Teuchos::RCP<panzer::ConnManager<int,int> > conn_manager_int
549 globalIndexerFactory.setUseTieBreak(use_load_balance);
550 globalIndexerFactory.setUseNeighbors(has_interface_condition);
551 Teuchos::RCP<panzer::UniqueGlobalIndexer<int,int> > dofManager
552 = globalIndexerFactory.buildUniqueGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager_int,
554 globalIndexer = dofManager;
556 if (has_interface_condition)
557 checkInterfaceConnections(conn_manager, dofManager->getComm());
565 TEUCHOS_ASSERT(globalIndexer!=Teuchos::null);
566 TEUCHOS_ASSERT(linObjFactory!=Teuchos::null);
567 m_global_indexer = globalIndexer;
568 m_lin_obj_factory = linObjFactory;
569 m_blockedAssembly = blockedAssembly;
572 fout <<
"Degree of freedom load balancing: " << loadBalanceString << std::endl;
577 Teuchos::RCP<panzer::WorksetContainer> wkstContainer
580 m_wkstContainer = wkstContainer;
583 wkstContainer->setGlobalIndexer(globalIndexer);
590 useDynamicCoordinates_ =
false;
591 for(std::size_t p=0;p<physicsBlocks.size();p++) {
592 if(physicsBlocks[p]->getCoordinateDOFs().size()>0) {
593 mesh->setUseFieldCoordinates(
true);
594 useDynamicCoordinates_ =
true;
595 wkstContainer->clear();
604 panzer_data_params.set(
"STK Mesh", mesh);
605 panzer_data_params.set(
"DOF Manager", globalIndexer);
606 panzer_data_params.set(
"Linear Object Factory", linObjFactory);
611 if(!meConstructionOn)
617 std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names;
618 std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values;
619 if (p.isSublist(
"Active Parameters")) {
620 Teuchos::ParameterList& active_params = p.sublist(
"Active Parameters");
622 int num_param_vecs = active_params.get<
int>(
"Number of Parameter Vectors",0);
623 p_names.resize(num_param_vecs);
624 p_values.resize(num_param_vecs);
625 for (
int i=0; i<num_param_vecs; i++) {
626 std::stringstream ss;
627 ss <<
"Parameter Vector " << i;
628 Teuchos::ParameterList& pList = active_params.sublist(ss.str());
629 int numParameters = pList.get<
int>(
"Number");
630 TEUCHOS_TEST_FOR_EXCEPTION(numParameters == 0,
631 Teuchos::Exceptions::InvalidParameter,
632 std::endl <<
"Error! panzer::ModelEvaluator::ModelEvaluator(): " <<
633 "Parameter vector " << i <<
" has zero parameters!" << std::endl);
635 Teuchos::rcp(
new Teuchos::Array<std::string>(numParameters));
637 Teuchos::rcp(
new Teuchos::Array<double>(numParameters));
638 for (
int j=0; j<numParameters; j++) {
639 std::stringstream ss2;
640 ss2 <<
"Parameter " << j;
641 (*p_names[i])[j] = pList.get<std::string>(ss2.str());
644 ss2 <<
"Initial Value " << j;
645 (*p_values[i])[j] = pList.get<
double>(ss2.str());
658 cm_factory.buildObjects(io_cm_builder);
663 Teuchos::RCP<panzer::FieldManagerBuilder> fmb;
665 bool write_dot_files = p.sublist(
"Options").get(
"Write Volume Assembly Graphs",
false);
666 std::string dot_file_prefix = p.sublist(
"Options").get(
"Volume Assembly Graph Prefix",
"Panzer_AssemblyGraph");
667 bool write_fm_files = p.sublist(
"Options").get(
"Write Field Manager Files",
false);
668 std::string fm_file_prefix = p.sublist(
"Options").get(
"Field Manager File Prefix",
"Panzer_AssemblyGraph");
670 fmb = buildFieldManagerBuilder(wkstContainer,physicsBlocks,bcs,*eqset_factory,bc_factory,cm_factory,
671 user_cm_factory,p.sublist(
"Closure Models"),*linObjFactory,user_data_params,
672 write_dot_files,dot_file_prefix,
673 write_fm_files,fm_file_prefix);
682 bool write_dot_files =
false;
683 std::string prefix =
"Panzer_ResponseGraph_";
684 write_dot_files = p.sublist(
"Options").get(
"Write Volume Response Graphs",write_dot_files);
685 prefix = p.sublist(
"Options").get(
"Volume Response Graph Prefix",prefix);
687 Teuchos::ParameterList user_data(p.sublist(
"User Data"));
688 user_data.set<
int>(
"Workset Size",workset_size);
694 Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<double> > lowsFactory =
702 t_init = this->getInitialTime(p.sublist(
"Initial Conditions").sublist(
"Transient Parameters"), *mesh);
704 if(blockedAssembly || useTpetra)
707 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me
708 = buildPhysicsModelEvaluator(useThyraME,
723 bool write_dot_files =
false;
724 std::string prefix =
"Panzer_AssemblyGraph_";
725 setupInitialConditions(*thyra_me,*wkstContainer,physicsBlocks,user_cm_factory,*linObjFactory,
726 p.sublist(
"Initial Conditions"),
727 p.sublist(
"User Data"),
728 p.sublist(
"Options").get(
"Write Volume Assembly Graphs",write_dot_files),
729 p.sublist(
"Options").get(
"Volume Assembly Graph Prefix",prefix));
734 writeInitialConditions(*thyra_me,physicsBlocks,wkstContainer,globalIndexer,linObjFactory,mesh,user_cm_factory,
735 p.sublist(
"Closure Models"),
736 p.sublist(
"User Data"),workset_size);
738 m_physics_me = thyra_me;
741 template<
typename ScalarT>
746 const Teuchos::ParameterList & cellAvgQuants = output_list.sublist(
"Cell Average Quantities");
747 for(Teuchos::ParameterList::ConstIterator itr=cellAvgQuants.begin();
748 itr!=cellAvgQuants.end();++itr) {
749 const std::string & blockId = itr->first;
750 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
751 std::vector<std::string> tokens;
756 for(std::size_t i=0;i<tokens.size();i++)
763 const Teuchos::ParameterList & cellAvgVectors = output_list.sublist(
"Cell Average Vectors");
764 for(Teuchos::ParameterList::ConstIterator itr = cellAvgVectors.begin();
765 itr != cellAvgVectors.end(); ++itr) {
766 const std::string & blockId = itr->first;
767 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
768 std::vector<std::string> tokens;
773 for(std::size_t i = 0; i < tokens.size(); i++) {
774 std::string d_mod[3] = {
"X",
"Y",
"Z"};
781 const Teuchos::ParameterList & cellQuants = output_list.sublist(
"Cell Quantities");
782 for(Teuchos::ParameterList::ConstIterator itr=cellQuants.begin();
783 itr!=cellQuants.end();++itr) {
784 const std::string & blockId = itr->first;
785 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
786 std::vector<std::string> tokens;
791 for(std::size_t i=0;i<tokens.size();i++)
796 const Teuchos::ParameterList & nodalQuants = output_list.sublist(
"Nodal Quantities");
797 for(Teuchos::ParameterList::ConstIterator itr=nodalQuants.begin();
798 itr!=nodalQuants.end();++itr) {
799 const std::string & blockId = itr->first;
800 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
801 std::vector<std::string> tokens;
806 for(std::size_t i=0;i<tokens.size();i++)
810 const Teuchos::ParameterList & allocNodalQuants = output_list.sublist(
"Allocate Nodal Quantities");
811 for(Teuchos::ParameterList::ConstIterator itr=allocNodalQuants.begin();
812 itr!=allocNodalQuants.end();++itr) {
813 const std::string & blockId = itr->first;
814 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
815 std::vector<std::string> tokens;
820 for(std::size_t i=0;i<tokens.size();i++)
825 template<
typename ScalarT>
829 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
832 const Teuchos::ParameterList & initial_cond_pl,
833 const Teuchos::ParameterList & user_data_pl,
834 bool write_dot_files,
const std::string & dot_file_prefix)
const 838 Thyra::ModelEvaluatorBase::InArgs<double> nomValues = model.getNominalValues();
841 if(initial_cond_pl.get<
bool>(
"Zero Initial Conditions")) {
843 Thyra::assign(x_vec.ptr(),0.0);
845 else if(!initial_cond_pl.sublist(
"Vector File").get<
bool>(
"Enabled")) {
848 std::map<std::string, Teuchos::RCP< PHX::FieldManager<panzer::Traits> > > phx_ic_field_managers;
857 phx_ic_field_managers);
867 const std::string & vectorFile = initial_cond_pl.sublist(
"Vector File").get<std::string>(
"File Name");
868 TEUCHOS_TEST_FOR_EXCEPTION(vectorFile==
"",std::runtime_error,
869 "If \"Read From Vector File\" is true, then parameter \"Vector File\" cannot be the empty string.");
881 template<
typename ScalarT>
884 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
885 const Teuchos::RCP<panzer::WorksetContainer> & wc,
886 const Teuchos::RCP<const panzer::UniqueGlobalIndexerBase> & ugi,
888 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh,
890 const Teuchos::ParameterList & closure_model_pl,
891 const Teuchos::ParameterList & user_data_pl,
892 int workset_size)
const 894 Teuchos::RCP<panzer::LinearObjContainer> loc = lof->buildLinearObjContainer();
898 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > solnWriter
899 = initializeSolnWriterResponseLibrary(wc,ugi,lof,mesh);
902 Teuchos::ParameterList user_data(user_data_pl);
903 user_data.set<
int>(
"Workset Size",workset_size);
905 finalizeSolnWriterResponseLibrary(*solnWriter,physicsBlocks,cm_factory,closure_model_pl,workset_size,user_data);
912 ae_inargs.
alpha = 0.0;
913 ae_inargs.
beta = 1.0;
928 template<
typename ScalarT>
931 Teuchos::RCP<panzer_stk::STK_MeshFactory> mesh_factory;
934 if (mesh_params.get<std::string>(
"Source") ==
"Exodus File") {
935 mesh_factory = Teuchos::rcp(
new panzer_stk::STK_ExodusReaderFactory());
936 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Exodus File"))));
938 else if (mesh_params.get<std::string>(
"Source") ==
"Pamgen Mesh") {
939 mesh_factory = Teuchos::rcp(
new panzer_stk::STK_PamgenReaderFactory());
940 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Pamgen Mesh"))));
942 else if (mesh_params.get<std::string>(
"Source") ==
"Inline Mesh") {
944 int dimension = mesh_params.sublist(
"Inline Mesh").get<
int>(
"Mesh Dimension");
945 std::string typeStr =
"";
946 if(mesh_params.sublist(
"Inline Mesh").isParameter(
"Type"))
947 typeStr = mesh_params.sublist(
"Inline Mesh").get<std::string>(
"Type");
951 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
952 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
953 mesh_factory->setParameterList(in_mesh);
955 else if (
dimension == 2 && typeStr==
"Tri") {
957 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
958 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
959 mesh_factory->setParameterList(in_mesh);
963 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
964 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
965 mesh_factory->setParameterList(in_mesh);
967 else if (
dimension == 3 && typeStr==
"Tet") {
969 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
970 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
971 mesh_factory->setParameterList(in_mesh);
975 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
976 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
977 mesh_factory->setParameterList(in_mesh);
981 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
982 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
983 mesh_factory->setParameterList(in_mesh);
986 else if (mesh_params.get<std::string>(
"Source") ==
"Custom Mesh") {
988 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Custom Mesh"))));
996 if(mesh_params.isSublist(
"Rebalance")) {
997 const Teuchos::ParameterList & rebalance = mesh_params.sublist(
"Rebalance");
1000 bool enabled =
false;
1001 if(rebalance.isType<
bool>(
"Enabled"))
1002 enabled = rebalance.get<
bool>(
"Enabled");
1005 Teuchos::RCP<Teuchos::ParameterList> rebalanceCycles;
1006 if(enabled && rebalance.isSublist(
"Cycles"))
1007 rebalanceCycles = Teuchos::rcp(
new Teuchos::ParameterList(rebalance.sublist(
"Cycles")));
1010 mesh_factory->enableRebalance(enabled,rebalanceCycles);
1013 return mesh_factory;
1016 template<
typename ScalarT>
1018 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> > & physicsBlocks,
1019 const Teuchos::MpiComm<int> mpi_comm,
1024 std::vector<Teuchos::RCP<panzer::PhysicsBlock> >::const_iterator physIter;
1025 for(physIter=physicsBlocks.begin();physIter!=physicsBlocks.end();++physIter) {
1027 double blockWeight = 0.0;
1029 Teuchos::RCP<const panzer::PhysicsBlock> pb = *physIter;
1030 const std::vector<panzer::StrPureBasisPair> & blockFields = pb->getProvidedDOFs();
1031 const std::vector<std::vector<std::string> > & coordinateDOFs = pb->getCoordinateDOFs();
1035 std::set<panzer::StrPureBasisPair,panzer::StrPureBasisComp> fieldNames;
1036 fieldNames.insert(blockFields.begin(),blockFields.end());
1041 std::set<std::string> fields_to_remove;
1045 for(std::size_t i=0;i<coordinateDOFs.size();i++) {
1047 for(std::size_t j=0;j<coordinateDOFs[i].size();j++)
1048 fields_to_remove.insert(coordinateDOFs[i][j]);
1052 std::set<std::string>::const_iterator rmItr;
1053 for (rmItr=fields_to_remove.begin();rmItr!=fields_to_remove.end();++rmItr)
1058 std::set<panzer::StrPureBasisPair,panzer::StrPureBasisComp>::const_iterator fieldItr;
1059 for (fieldItr=fieldNames.begin();fieldItr!=fieldNames.end();++fieldItr) {
1061 if(fieldItr->second->isScalarBasis() &&
1063 mesh.
addCellField(fieldItr->first,pb->elementBlockID());
1065 else if(fieldItr->second->isScalarBasis()) {
1068 else if(fieldItr->second->isVectorBasis()) {
1069 std::string d_mod[3] = {
"X",
"Y",
"Z"};
1070 for(
int d=0;d<fieldItr->second->dimension();d++)
1071 mesh.
addCellField(fieldItr->first+d_mod[d],pb->elementBlockID());
1073 else { TEUCHOS_ASSERT(
false); }
1075 blockWeight += double(fieldItr->second->cardinality());
1088 template<
typename ScalarT>
1091 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(m_physics_me), std::runtime_error,
1092 "Objects are not built yet! Please call buildObjects() member function.");
1093 return m_physics_me;
1096 template<
typename ScalarT>
1099 m_nox_observer_factory = nox_observer_factory;
1102 template<
typename ScalarT>
1105 m_rythmos_observer_factory = rythmos_observer_factory;
1108 template<
typename ScalarT>
1111 m_user_wkst_factory = user_wkst_factory;
1114 template<
typename ScalarT>
1117 if(m_rome_me==Teuchos::null)
1118 m_rome_me = buildResponseOnlyModelEvaluator(m_physics_me,m_global_data);
1123 template<
typename ScalarT>
1126 const Teuchos::RCP<panzer::GlobalData>&
global_data,
1128 const Teuchos::Ptr<const panzer_stk::NOXObserverFactory> & in_nox_observer_factory,
1129 const Teuchos::Ptr<const panzer_stk::RythmosObserverFactory> & in_rythmos_observer_factory
1132 using Teuchos::is_null;
1135 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_lin_obj_factory), std::runtime_error,
1136 "Objects are not built yet! Please call buildObjects() member function.");
1137 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_global_indexer), std::runtime_error,
1138 "Objects are not built yet! Please call buildObjects() member function.");
1139 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_mesh), std::runtime_error,
1140 "Objects are not built yet! Please call buildObjects() member function.");
1141 Teuchos::Ptr<const panzer_stk::NOXObserverFactory> nox_observer_factory
1142 = is_null(in_nox_observer_factory) ? m_nox_observer_factory.ptr() : in_nox_observer_factory;
1143 Teuchos::Ptr<const panzer_stk::RythmosObserverFactory> rythmos_observer_factory
1144 = is_null(in_rythmos_observer_factory) ? m_rythmos_observer_factory.ptr() : in_rythmos_observer_factory;
1146 Teuchos::ParameterList& p = *this->getNonconstParameterList();
1147 Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
1148 Teuchos::RCP<Teuchos::ParameterList> piro_params = Teuchos::rcp(
new Teuchos::ParameterList(solncntl_params));
1149 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > piro;
1151 std::string solver = solncntl_params.get<std::string>(
"Piro Solver");
1152 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me_db
1153 = Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me);
1154 if ( (solver==
"NOX") || (solver ==
"LOCA") ) {
1156 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(nox_observer_factory), std::runtime_error,
1157 "No NOX obersver built! Please call setNOXObserverFactory() member function if you plan to use a NOX solver.");
1159 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1160 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1163 piro = Teuchos::rcp(
new Piro::NOXSolver<double>(piro_params,
1164 Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me_db)));
1165 else if (solver ==
"LOCA")
1166 piro = Teuchos::rcp(
new Piro::LOCASolver<double>(piro_params,
1167 Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me_db),
1169 TEUCHOS_ASSERT(nonnull(piro));
1172 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",
global_data->os);
1173 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",
global_data->os);
1174 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",
global_data->os->getOutputToRootOnly());
1176 else if (solver==
"Rythmos") {
1178 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(rythmos_observer_factory), std::runtime_error,
1179 "No NOX obersver built! Please call setrythmosObserverFactory() member function if you plan to use a Rythmos solver.");
1182 if(rythmos_observer_factory->useNOXObserver()) {
1183 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1184 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1188 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",
global_data->os);
1189 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",
global_data->os);
1190 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",
global_data->os->getOutputToRootOnly());
1193 Teuchos::RCP<Piro::RythmosSolver<double> > piro_rythmos;
1194 if(rythmosSolver==Teuchos::null)
1197 piro_rythmos = rythmosSolver;
1200 Teuchos::RCP<Thyra::ModelEvaluator<ScalarT> > rythmos_me = thyra_me;
1201 const std::string stepper_type = piro_params->sublist(
"Rythmos").get<std::string>(
"Stepper Type");
1202 if(stepper_type==
"Explicit RK" || stepper_type==
"Forward Euler") {
1203 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1204 bool lumpExplicitMass = assembly_params.get<
bool>(
"Lump Explicit Mass");
1208 piro_rythmos->initialize(piro_params, rythmos_me, rythmos_observer_factory->buildRythmosObserver(m_mesh,m_global_indexer,m_lin_obj_factory));
1210 piro = piro_rythmos;
1213 TEUCHOS_TEST_FOR_EXCEPTION(
true, std::logic_error,
1214 "Error: Unknown Piro Solver : " << solver);
1219 template<
typename ScalarT>
1222 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(m_response_library), std::runtime_error,
1223 "Objects are not built yet! Please call buildObjects() member function.");
1225 return m_response_library;
1228 template<
typename ScalarT>
1231 TEUCHOS_TEST_FOR_EXCEPTION(m_physics_blocks.size()==0, std::runtime_error,
1232 "Objects are not built yet! Please call buildObjects() member function.");
1234 return m_physics_blocks;
1237 template<
typename ScalarT>
1238 Teuchos::RCP<panzer::FieldManagerBuilder>
1241 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
1242 const std::vector<panzer::BC> & bcs,
1247 const Teuchos::ParameterList& closure_models,
1249 const Teuchos::ParameterList& user_data,
1250 bool writeGraph,
const std::string & graphPrefix,
1251 bool write_field_managers,
const std::string & field_manager_prefix)
const 1254 fmb->setWorksetContainer(wc);
1255 fmb->setupVolumeFieldManagers(physicsBlocks,volume_cm_factory,closure_models,lo_factory,user_data);
1256 fmb->setupBCFieldManagers(bcs,physicsBlocks,eqset_factory,bc_cm_factory,bc_factory,closure_models,lo_factory,user_data);
1260 fmb->writeVolumeGraphvizDependencyFiles(graphPrefix, physicsBlocks);
1261 fmb->writeBCGraphvizDependencyFiles(graphPrefix);
1263 if (write_field_managers){
1264 fmb->writeVolumeTextDependencyFiles(graphPrefix, physicsBlocks);
1265 fmb->writeBCTextDependencyFiles(field_manager_prefix);
1271 template<
typename ScalarT>
1272 Teuchos::RCP<Thyra::ModelEvaluator<double> >
1275 const Teuchos::RCP<Teuchos::ParameterList> & physics_block_plist,
1276 const Teuchos::RCP<const panzer::EquationSetFactory>& eqset_factory,
1279 bool is_transient,
bool is_explicit,
1280 const Teuchos::Ptr<const Teuchos::ParameterList> & bc_list,
1285 Teuchos::RCP<Thyra::ModelEvaluator<ScalarT> > physics_me = physics_me_in==Teuchos::null ? m_physics_me : physics_me_in;
1287 const Teuchos::ParameterList& p = *this->getParameterList();
1290 std::vector<Teuchos::RCP<panzer::PhysicsBlock> > physicsBlocks;
1292 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1295 std::map<std::string,std::string> block_ids_to_physics_ids;
1299 std::map<std::string,Teuchos::RCP<const shards::CellTopology> > block_ids_to_cell_topo;
1300 for(std::map<std::string,std::string>::const_iterator itr=block_ids_to_physics_ids.begin();
1301 itr!=block_ids_to_physics_ids.end();++itr) {
1302 block_ids_to_cell_topo[itr->first] = m_mesh->getCellTopology(itr->first);
1303 TEUCHOS_ASSERT(block_ids_to_cell_topo[itr->first]!=Teuchos::null);
1306 std::size_t workset_size = Teuchos::as<std::size_t>(assembly_params.get<
int>(
"Workset Size"));
1308 panzer::buildPhysicsBlocks(block_ids_to_physics_ids,
1309 block_ids_to_cell_topo,
1310 physics_block_plist,
1311 assembly_params.get<
int>(
"Default Integration Order"),
1320 Teuchos::RCP<panzer::FieldManagerBuilder> fmb;
1322 const Teuchos::ParameterList & user_data_params = p.sublist(
"User Data");
1324 bool write_dot_files =
false;
1325 std::string prefix =
"Cloned_";
1327 std::vector<panzer::BC> bcs;
1328 if(bc_list==Teuchos::null) {
1329 panzer::buildBCs(bcs, p.sublist(
"Boundary Conditions"), m_global_data);
1332 panzer::buildBCs(bcs, *bc_list, m_global_data);
1335 fmb = buildFieldManagerBuilder(
1345 p.sublist(
"Closure Models"),
1348 write_dot_files,prefix,
1349 write_dot_files,prefix);
1352 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > response_library
1355 m_lin_obj_factory));
1363 Thyra::ModelEvaluatorBase::InArgs<ScalarT> nomVals = physics_me->getNominalValues();
1366 Teuchos::RCP<Thyra::EpetraModelEvaluator> ep_thyra_me = Teuchos::rcp_dynamic_cast<Thyra::EpetraModelEvaluator>(physics_me);
1367 Teuchos::RCP<PanzerME> panzer_me = Teuchos::rcp_dynamic_cast<PanzerME>(physics_me);
1368 bool useThyra =
true;
1369 if(ep_thyra_me!=Teuchos::null)
1373 std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names(physics_me->Np());
1374 std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values(physics_me->Np());
1375 for(std::size_t i=0;i<p_names.size();i++) {
1376 p_names[i] = Teuchos::rcp(
new Teuchos::Array<std::string>(*physics_me->get_p_names(i)));
1377 p_values[i] = Teuchos::rcp(
new Teuchos::Array<double>(p_names[i]->size(),0.0));
1380 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me
1381 = buildPhysicsModelEvaluator(useThyra,
1393 thyra_me->getNominalValues() = nomVals;
1397 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1398 bool lumpExplicitMass = assembly_params.get<
bool>(
"Lump Explicit Mass");
1406 template<
typename ScalarT>
1407 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> >
1410 const Teuchos::RCP<panzer::FieldManagerBuilder> & fmb,
1413 const std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > & p_names,
1414 const std::vector<Teuchos::RCP<Teuchos::Array<double> > > & p_values,
1416 const Teuchos::RCP<panzer::GlobalData> &
global_data,
1417 bool is_transient,
double t_init)
const 1419 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me;
1421 Teuchos::RCP<panzer::ModelEvaluator_Epetra> ep_me
1425 ep_me->set_t_init(t_init);
1428 thyra_me = Thyra::epetraModelEvaluator(ep_me,solverFactory);
1432 (fmb,rLibrary,lof,p_names,p_values,solverFactory,
global_data,is_transient,t_init));
1438 template<
typename ScalarT>
1443 Teuchos::ParameterList validPL;
1445 Teuchos::setStringToIntegralParameter<int>(
1448 "Set the start time",
1449 Teuchos::tuple<std::string>(
"From Input File",
"From Exodus File"),
1453 validPL.set<
double>(
"Start Time",0.0);
1456 p.validateParametersAndSetDefaults(validPL);
1458 std::string t_init_type = p.get<std::string>(
"Start Time Type");
1459 double t_init = 10.0;
1461 if (t_init_type ==
"From Input File")
1462 t_init = p.get<
double>(
"Start Time");
1464 if (t_init_type ==
"From Exodus File")
1472 template<
typename ScalarT>
1475 const Teuchos::RCP<const panzer::UniqueGlobalIndexerBase> & ugi,
1477 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh)
const 1479 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > stkIOResponseLibrary
1482 std::vector<std::string> eBlocks;
1483 mesh->getElementBlockNames(eBlocks);
1486 builder.
mesh = mesh;
1487 stkIOResponseLibrary->addResponse(
"Main Field Output",eBlocks,builder);
1489 return stkIOResponseLibrary;
1492 template<
typename ScalarT>
1495 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> > & physicsBlocks,
1497 const Teuchos::ParameterList & closure_models,
1498 int workset_size, Teuchos::ParameterList & user_data)
const 1500 user_data.set<
int>(
"Workset Size",workset_size);
1504 template<
typename ScalarT>
1507 const Teuchos::RCP<const panzer::UniqueGlobalIndexerBase> & globalIndexer,
1509 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh,
1510 const Teuchos::RCP<
const Teuchos::MpiComm<int> > & mpi_comm
1511 #ifdef PANZER_HAVE_TEKO
1512 ,
const Teuchos::RCP<Teko::RequestHandler> & reqHandler
1516 const Teuchos::ParameterList & p = *this->getParameterList();
1517 const Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
1520 Teuchos::RCP<Teuchos::ParameterList> strat_params
1521 = Teuchos::rcp(
new Teuchos::ParameterList(solncntl_params.sublist(
"NOX").sublist(
"Direction").
1522 sublist(
"Newton").sublist(
"Stratimikos Linear Solver").sublist(
"Stratimikos")));
1524 bool writeCoordinates =
false;
1525 if(p.sublist(
"Options").isType<
bool>(
"Write Coordinates"))
1526 writeCoordinates = p.sublist(
"Options").get<
bool>(
"Write Coordinates");
1528 bool writeTopo =
false;
1529 if(p.sublist(
"Options").isType<
bool>(
"Write Topology"))
1530 writeTopo = p.sublist(
"Options").get<
bool>(
"Write Topology");
1534 blockedAssembly,globalIndexer,conn_manager,
1535 Teuchos::as<int>(mesh->getDimension()), mpi_comm, strat_params,
1536 #ifdef PANZER_HAVE_TEKO
1544 template<
typename ScalarT>
1547 const bool write_graphviz_file,
1548 const std::string& graphviz_file_prefix)
1552 Teuchos::ParameterList & p = *this->getNonconstParameterList();
1553 Teuchos::ParameterList & user_data = p.sublist(
"User Data");
1554 Teuchos::ParameterList & closure_models = p.sublist(
"Closure Models");
1557 Teuchos::RCP<Thyra::EpetraModelEvaluator> thyra_me = Teuchos::rcp_dynamic_cast<Thyra::EpetraModelEvaluator>(m_physics_me);
1558 Teuchos::RCP<PanzerME> panzer_me = Teuchos::rcp_dynamic_cast<PanzerME>(m_physics_me);
1560 if(thyra_me!=Teuchos::null && panzer_me==Teuchos::null) {
1561 Teuchos::RCP<const EpetraExt::ModelEvaluator> const_ep_me;
1562 Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<double> > solveFactory;
1563 thyra_me->uninitialize(&const_ep_me,&solveFactory);
1566 Teuchos::RCP<EpetraExt::ModelEvaluator> ep_me = Teuchos::rcp_const_cast<EpetraExt::ModelEvaluator>(const_ep_me);
1569 ep_panzer_me->
buildResponses(m_physics_blocks,*m_eqset_factory,cm_factory,closure_models,user_data,write_graphviz_file,graphviz_file_prefix);
1572 thyra_me->initialize(ep_me,solveFactory);
1576 else if(panzer_me!=Teuchos::null && thyra_me==Teuchos::null) {
1577 panzer_me->buildResponses(m_physics_blocks,*m_eqset_factory,cm_factory,closure_models,user_data,write_graphviz_file,graphviz_file_prefix);
1582 TEUCHOS_ASSERT(
false);
Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > initializeSolnWriterResponseLibrary(const Teuchos::RCP< panzer::WorksetContainer > &wc, const Teuchos::RCP< const panzer::UniqueGlobalIndexerBase > &ugi, const Teuchos::RCP< const panzer::LinearObjFactory< panzer::Traits > > &lof, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh) const
void writeInitialConditions(const Thyra::ModelEvaluator< ScalarT > &model, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< panzer::WorksetContainer > &wc, const Teuchos::RCP< const panzer::UniqueGlobalIndexerBase > &ugi, const Teuchos::RCP< const panzer::LinearObjFactory< panzer::Traits > > &lof, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_model_pl, const Teuchos::ParameterList &user_data_pl, int workset_size) const
Write the initial conditions to exodus. Note that this is entirely self contained.
void TokensToInts(std::vector< int > &values, const std::vector< std::string > &tokens)
Turn a vector of tokens into a vector of ints.
void setRythmosObserverFactory(const Teuchos::RCP< const panzer_stk::RythmosObserverFactory > &rythmos_observer_factory)
Interface for constructing a BCStrategy_TemplateManager.
virtual void completeMeshConstruction(STK_Interface &mesh, stk::ParallelMachine parallelMach) const =0
Allocates and initializes an equation set template manager.
bool evaluate_transient_terms
void finalizeMeshConstruction(const STK_MeshFactory &mesh_factory, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::MpiComm< int > mpi_comm, STK_Interface &mesh) const
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > getPhysicsModelEvaluator()
Teuchos::RCP< Thyra::ModelEvaluator< double > > cloneWithNewPhysicsBlocks(const Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< ScalarT > > &solverFactory, const Teuchos::RCP< Teuchos::ParameterList > &physics_block_plist, const Teuchos::RCP< const panzer::EquationSetFactory > &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &user_cm_factory, bool is_transient, bool is_explicit, const Teuchos::Ptr< const Teuchos::ParameterList > &bc_list=Teuchos::null, const Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > &physics_me=Teuchos::null) const
void setUseDOFManagerFEI(bool flag)
void buildBlockIdToPhysicsIdMap(std::map< std::string, std::string > &b_to_p, const Teuchos::ParameterList &p)
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const
virtual void set_x_th(const Teuchos::RCP< Thyra::VectorBase< ScalarT > > &in)=0
void addSolutionField(const std::string &fieldName, const std::string &blockId)
void setParameterList(Teuchos::RCP< Teuchos::ParameterList > const ¶mList)
void setUseTieBreak(bool flag)
Teuchos::RCP< panzer::LinearObjContainer > ghostedContainer_
Teuchos::RCP< panzer_stk::STK_Interface > mesh
Class that provides access to worksets on each element block and side set.
PHX::MDField< ScalarT > vector
Teuchos::RCP< panzer::GlobalData > global_data
virtual Teuchos::RCP< panzer::UniqueGlobalIndexer< LO, std::pair< int, GO > > > buildUniqueGlobalIndexer(const Teuchos::RCP< const Teuchos::OpaqueWrapper< MPI_Comm > > &mpiComm, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< ConnManager< LO, GO > > &connMngr, const std::string &fieldOrder="") const
void setupInitialConditions(Thyra::ModelEvaluator< ScalarT > &model, panzer::WorksetContainer &wkstContainer, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const panzer::LinearObjFactory< panzer::Traits > &lof, const Teuchos::ParameterList &initial_cond_pl, const Teuchos::ParameterList &user_data_pl, bool write_dot_files, const std::string &dot_file_prefix) const
Setup the initial conditions in a model evaluator. Note that this is entirely self contained...
Teuchos::RCP< panzer::LinearObjContainer > container_
Teuchos::RCP< panzer::FieldManagerBuilder > buildFieldManagerBuilder(const Teuchos::RCP< panzer::WorksetContainer > &wc, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const std::vector< panzer::BC > &bcs, const panzer::EquationSetFactory &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &volume_cm_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &bc_cm_factory, const Teuchos::ParameterList &closure_models, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const Teuchos::ParameterList &user_data, bool writeGraph, const std::string &graphPrefix, bool write_field_managers, const std::string &field_manager_prefix) const
unsigned getDimension() const
get the dimension
void buildResponseEvaluators(const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, const Teuchos::ParameterList &user_data, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > buildResponseOnlyModelEvaluator(const Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > &thyra_me, const Teuchos::RCP< panzer::GlobalData > &global_data, const Teuchos::RCP< Piro::RythmosSolver< ScalarT > > rythmosSolver=Teuchos::null, const Teuchos::Ptr< const panzer_stk::NOXObserverFactory > &in_nox_observer_factory=Teuchos::null, const Teuchos::Ptr< const panzer_stk::RythmosObserverFactory > &in_rythmos_observer_factory=Teuchos::null)
void buildResponses(const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::EquationSetFactory &eqset_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, const Teuchos::ParameterList &user_data, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
void addUserFieldsToMesh(panzer_stk::STK_Interface &mesh, const Teuchos::ParameterList &output_list) const
Add the user fields specified by output_list to the mesh.
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > getResponseOnlyModelEvaluator()
Teuchos::RCP< Thyra::ModelEvaluatorDefaultBase< double > > buildPhysicsModelEvaluator(bool buildThyraME, const Teuchos::RCP< panzer::FieldManagerBuilder > &fmb, const Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > &rLibrary, const Teuchos::RCP< panzer::LinearObjFactory< panzer::Traits > > &lof, const std::vector< Teuchos::RCP< Teuchos::Array< std::string > > > &p_names, const std::vector< Teuchos::RCP< Teuchos::Array< double > > > &p_values, const Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< ScalarT > > &solverFactory, const Teuchos::RCP< panzer::GlobalData > &global_data, bool is_transient, double t_init) const
Teuchos::RCP< Teuchos::ParameterList > getValidParameters() const
void setNOXObserverFactory(const Teuchos::RCP< const panzer_stk::NOXObserverFactory > &nox_observer_factory)
Teuchos::RCP< STK_MeshFactory > buildSTKMeshFactory(const Teuchos::ParameterList &mesh_params) const
build STK mesh factory from a mesh parameter list
void buildObjects(const Teuchos::RCP< const Teuchos::Comm< int > > &comm, const Teuchos::RCP< panzer::GlobalData > &global_data, const Teuchos::RCP< const panzer::EquationSetFactory > &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, bool meConstructionOn=true)
Builds the model evaluators for a panzer assembly.
void setUseDOFManagerFEI(bool flag)
virtual Teuchos::RCP< LinearObjContainer > buildLinearObjContainer() const =0
std::string printUGILoadBalancingInformation(const UniqueGlobalIndexer< LocalOrdinalT, GlobalOrdinalT > &ugi)
double getInitialStateTime() const
void setBlockWeight(const std::string &blockId, double weight)
Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > buildLOWSFactory(bool blockedAssembly, const Teuchos::RCP< const panzer::UniqueGlobalIndexerBase > &globalIndexer, const Teuchos::RCP< panzer::ConnManagerBase< int > > &conn_manager, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm) const
double getInitialTime(Teuchos::ParameterList &transient_ic_params, const panzer_stk::STK_Interface &mesh) const
Gets the initial time from either the input parameter list or an exodus file.
virtual void readVector(const std::string &identifier, LinearObjContainer &loc, int id) const =0
void addMeshCoordFields(const std::string &blockId, const std::vector< std::string > &coordField, const std::string &dispPrefix)
void setupInitialConditionFieldManagers(WorksetContainer &wkstContainer, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &ic_block_closure_models, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const Teuchos::ParameterList &user_data, const bool write_graphviz_file, const std::string &graphviz_file_prefix, std::map< std::string, Teuchos::RCP< PHX::FieldManager< panzer::Traits > > > &phx_ic_field_managers)
Builds PHX::FieldManager objects for inital conditions and registers evaluators.
void buildResponses(const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
Teuchos::RCP< const Teuchos::Comm< int > > comm
const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > & getPhysicsBlocks() const
void finalizeSolnWriterResponseLibrary(panzer::ResponseLibrary< panzer::Traits > &rl, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, int workset_size, Teuchos::ParameterList &user_data) const
std::pair< std::string, Teuchos::RCP< panzer::PureBasis > > StrPureBasisPair
virtual Teuchos::RCP< panzer::UniqueGlobalIndexer< LO, GO > > buildUniqueGlobalIndexer(const Teuchos::RCP< const Teuchos::OpaqueWrapper< MPI_Comm > > &mpiComm, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< ConnManager< LO, GO > > &connMngr, const std::string &fieldOrder="") const
void StringTokenizer(std::vector< std::string > &tokens, const std::string &str, const std::string delimiters, bool trim)
Tokenize a string, put tokens in a vector.
void addCellField(const std::string &fieldName, const std::string &blockId)
void evaluateInitialCondition(WorksetContainer &wkstContainer, const std::map< std::string, Teuchos::RCP< PHX::FieldManager< panzer::Traits > > > &phx_ic_field_managers, Teuchos::RCP< panzer::LinearObjContainer > loc, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const double time_stamp)
void registerScalarParameter(const std::string name, panzer::ParamLib &pl, double realValue)
void setUserWorksetFactory(Teuchos::RCP< panzer_stk::WorksetFactory > &user_wkst_factory)
Set user defined workset factory.
Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > getResponseLibrary()
Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > buildLOWSFactory(bool blockedAssembly, const Teuchos::RCP< const panzer::UniqueGlobalIndexerBase > &globalIndexer, const Teuchos::RCP< panzer::ConnManagerBase< int > > &conn_manager, int spatialDim, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm, const Teuchos::RCP< Teuchos::ParameterList > &strat_params, bool writeCoordinates, bool writeTopo)