CRAN Package Check Results for Package CodelistGenerator

Last updated on 2024-11-27 09:49:28 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.3.0 7.31 389.28 396.59 ERROR
r-devel-linux-x86_64-debian-gcc 3.3.0 4.59 286.21 290.80 ERROR
r-devel-linux-x86_64-fedora-clang 3.3.1 648.29 OK
r-devel-linux-x86_64-fedora-gcc 3.3.1 737.98 OK
r-devel-windows-x86_64 3.3.1 12.00 233.00 245.00 OK
r-patched-linux-x86_64 3.3.0 7.63 375.32 382.95 ERROR
r-release-linux-x86_64 3.2.1 5.35 365.71 371.06 OK
r-release-macos-arm64 3.3.1 113.00 OK
r-release-macos-x86_64 3.3.1 167.00 OK
r-release-windows-x86_64 3.3.0 9.00 242.00 251.00 ERROR
r-oldrel-macos-arm64 3.3.1 124.00 OK
r-oldrel-macos-x86_64 3.3.1 201.00 OK
r-oldrel-windows-x86_64 3.3.1 13.00 298.00 311.00 OK

Check Details

Version: 3.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [311s/164s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CodelistGenerator) > > test_check("CodelistGenerator") Starting 2 test processes [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • On CRAN (13): 'test-drugCodes.R:123:3', 'test-drugCodes.R:443:3', 'test-helperFunctions.R:2:3', 'test-helperFunctions.R:31:3', 'test-helperFunctions.R:46:3', 'test-helperFunctions.R:61:3', 'test-getCandidateCodes.R:310:3', 'test-summariseCodeUse.R:2:1', 'test-summariseCodeUse.R:295:3', 'test-tableAchillesCodeUse.R:2:3', 'test-tableAchillesCodeUse.R:65:3', 'test-tableCodeUse.R:2:3', 'test-tableCodeUse.R:96:3' • Sys.getenv("CDM5_POSTGRESQL_DBNAME") == "" is TRUE (1): 'test-dbms.R:306:3' • Sys.getenv("CDM5_REDSHIFT_DBNAME") == "" is TRUE (4): 'test-codesFrom.R:131:3', 'test-dbms.R:5:3', 'test-findUnmappedCodes.R:3:3', 'test-summariseCodeUse.R:492:3' • Sys.getenv("CDM5_SQL_SERVER_SERVER") == "" is TRUE (2): 'test-codesInUse.R:36:3', 'test-dbms.R:458:3' • Sys.getenv("SNOWFLAKE_SERVER") == "" is TRUE (1): 'test-dbms.R:168:3' • Sys.getenv("darwinDbDatabaseServer") == "" is TRUE (1): 'test-synthea_sql_server.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseAchillesCodeUse.R:28:3'): achilles code use ───────── all(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [226s/166s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CodelistGenerator) > > test_check("CodelistGenerator") Starting 2 test processes [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • On CRAN (13): 'test-drugCodes.R:123:3', 'test-drugCodes.R:443:3', 'test-helperFunctions.R:2:3', 'test-helperFunctions.R:31:3', 'test-helperFunctions.R:46:3', 'test-helperFunctions.R:61:3', 'test-getCandidateCodes.R:310:3', 'test-summariseCodeUse.R:2:1', 'test-summariseCodeUse.R:295:3', 'test-tableAchillesCodeUse.R:2:3', 'test-tableAchillesCodeUse.R:65:3', 'test-tableCodeUse.R:2:3', 'test-tableCodeUse.R:96:3' • Sys.getenv("CDM5_POSTGRESQL_DBNAME") == "" is TRUE (1): 'test-dbms.R:306:3' • Sys.getenv("CDM5_REDSHIFT_DBNAME") == "" is TRUE (4): 'test-codesFrom.R:131:3', 'test-dbms.R:5:3', 'test-findUnmappedCodes.R:3:3', 'test-summariseCodeUse.R:492:3' • Sys.getenv("CDM5_SQL_SERVER_SERVER") == "" is TRUE (2): 'test-codesInUse.R:36:3', 'test-dbms.R:458:3' • Sys.getenv("SNOWFLAKE_SERVER") == "" is TRUE (1): 'test-dbms.R:168:3' • Sys.getenv("darwinDbDatabaseServer") == "" is TRUE (1): 'test-synthea_sql_server.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseAchillesCodeUse.R:28:3'): achilles code use ───────── all(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [301s/156s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CodelistGenerator) > > test_check("CodelistGenerator") Starting 2 test processes [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • On CRAN (13): 'test-drugCodes.R:123:3', 'test-drugCodes.R:443:3', 'test-helperFunctions.R:2:3', 'test-helperFunctions.R:31:3', 'test-helperFunctions.R:46:3', 'test-helperFunctions.R:61:3', 'test-getCandidateCodes.R:310:3', 'test-summariseCodeUse.R:2:1', 'test-summariseCodeUse.R:295:3', 'test-tableAchillesCodeUse.R:2:3', 'test-tableAchillesCodeUse.R:65:3', 'test-tableCodeUse.R:2:3', 'test-tableCodeUse.R:96:3' • Sys.getenv("CDM5_POSTGRESQL_DBNAME") == "" is TRUE (1): 'test-dbms.R:306:3' • Sys.getenv("CDM5_REDSHIFT_DBNAME") == "" is TRUE (4): 'test-codesFrom.R:131:3', 'test-dbms.R:5:3', 'test-findUnmappedCodes.R:3:3', 'test-summariseCodeUse.R:492:3' • Sys.getenv("CDM5_SQL_SERVER_SERVER") == "" is TRUE (2): 'test-codesInUse.R:36:3', 'test-dbms.R:458:3' • Sys.getenv("SNOWFLAKE_SERVER") == "" is TRUE (1): 'test-dbms.R:168:3' • Sys.getenv("darwinDbDatabaseServer") == "" is TRUE (1): 'test-synthea_sql_server.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseAchillesCodeUse.R:28:3'): achilles code use ───────── all(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 3.3.0
Check: tests
Result: ERROR Running 'testthat.R' [129s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CodelistGenerator) > > test_check("CodelistGenerator") Starting 2 test processes [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • On CRAN (13): 'test-drugCodes.R:123:3', 'test-drugCodes.R:443:3', 'test-helperFunctions.R:2:3', 'test-helperFunctions.R:31:3', 'test-helperFunctions.R:46:3', 'test-helperFunctions.R:61:3', 'test-getCandidateCodes.R:310:3', 'test-summariseCodeUse.R:2:1', 'test-summariseCodeUse.R:295:3', 'test-tableAchillesCodeUse.R:2:3', 'test-tableAchillesCodeUse.R:65:3', 'test-tableCodeUse.R:2:3', 'test-tableCodeUse.R:96:3' • Sys.getenv("CDM5_POSTGRESQL_DBNAME") == "" is TRUE (1): 'test-dbms.R:306:3' • Sys.getenv("CDM5_REDSHIFT_DBNAME") == "" is TRUE (4): 'test-codesFrom.R:131:3', 'test-dbms.R:5:3', 'test-findUnmappedCodes.R:3:3', 'test-summariseCodeUse.R:492:3' • Sys.getenv("CDM5_SQL_SERVER_SERVER") == "" is TRUE (2): 'test-codesInUse.R:36:3', 'test-dbms.R:458:3' • Sys.getenv("SNOWFLAKE_SERVER") == "" is TRUE (1): 'test-dbms.R:168:3' • Sys.getenv("darwinDbDatabaseServer") == "" is TRUE (1): 'test-synthea_sql_server.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseAchillesCodeUse.R:28:3'): achilles code use ───────── all(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 444 | SKIP 22 | PASS 402 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64