## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----eval=!(Sys.getenv("NOT_CRAN") == "true"), include=FALSE------------------ # knitr::knit_exit() ## ----include = FALSE---------------------------------------------------------- # Load credentials redcap_uri <- Sys.getenv("REDCAP_URI") token <- Sys.getenv("SUPERHEROES_REDCAP_API") ## ----------------------------------------------------------------------------- library(REDCapTidieR) superheroes <- read_redcap(redcap_uri, token) superheroes |> rmarkdown::paged_table() ## ----------------------------------------------------------------------------- superheroes_list <- superheroes |> extract_tibbles() superheroes_list |> str(max.level = 1) ## ----------------------------------------------------------------------------- superheroes |> extract_tibbles(ends_with("powers")) |> str(max.level = 1) ## ----------------------------------------------------------------------------- superheroes |> extract_tibble("heroes_information") |> rmarkdown::paged_table() ## ----------------------------------------------------------------------------- lobstr::obj_size(superheroes) ## ----------------------------------------------------------------------------- superheroes |> bind_tibbles() lobstr::obj_size(superheroes, heroes_information, super_hero_powers) ## ----------------------------------------------------------------------------- a <- superheroes |> extract_tibble("heroes_information") b <- superheroes |> extract_tibbles() lobstr::obj_size(superheroes, a, b) ## ----------------------------------------------------------------------------- superheroes |> make_labelled() |> bind_tibbles() labelled::look_for(heroes_information) ## ----------------------------------------------------------------------------- superheroes |> make_labelled(format_labels = ~ gsub(":", "", .)) |> bind_tibbles() labelled::look_for(heroes_information, "hero") ## ----------------------------------------------------------------------------- fmt_strip_trailing_colon("Hero name:") ## ----------------------------------------------------------------------------- superheroes |> make_labelled( format_labels = c( fmt_strip_trailing_colon, base::tolower ) ) |> bind_tibbles() labelled::look_for(heroes_information) ## ----------------------------------------------------------------------------- # Extract the heroes_information metadata tibble and add metadata heroes_information_metadata <- superheroes |> add_skimr_metadata() |> dplyr::select(redcap_metadata) |> purrr::pluck(1, 1) # Highlight the numeric summaries created by add_skimr_metadata() heroes_information_metadata |> dplyr::select(field_name, skim_type:complete_rate, starts_with("numeric")) |> rmarkdown::paged_table()