Easy-to-use, efficient, flexible and scalable tools for analyzing
massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
| Version: |
1.12.18 |
| Depends: |
R (≥ 3.4), bigstatsr (≥ 1.5.11) |
| Imports: |
bigassertr (≥ 0.1.6), bigparallelr, bigsparser (≥ 0.6), bigreadr, bigutilsr (≥ 0.3.3), data.table (≥ 1.12.4), doRNG, foreach, ggplot2, magrittr, Matrix (≥ 1.3.0), methods, Rcpp, runonce (≥ 0.2.3), stats, vctrs |
| LinkingTo: |
bigsparser, bigstatsr, Rcpp, RcppArmadillo (≥ 0.9.600), rmio, roptim (≥ 0.1.6) |
| Suggests: |
bindata, covr, dbplyr (≥ 1.4), dplyr, gaston, glue, Hmisc, microbenchmark, pcadapt (≥ 4.1), quadprog, RhpcBLASctl, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost |
| Published: |
2024-11-26 |
| DOI: |
10.32614/CRAN.package.bigsnpr |
| Author: |
Florian Privé [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths],
Bjarni Jóhann Vilhjálmsson [ths] |
| Maintainer: |
Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: |
https://github.com/privefl/bigsnpr/issues |
| License: |
GPL-3 |
| URL: |
https://privefl.github.io/bigsnpr/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
A few functions from package 'bigsnpr' wrap
existing software such as 'PLINK'
<www.cog-genomics.org/plink2>. Functions are provided to
download these software. Note that these external software
might not work for some operating systems (e.g. 'PLINK' might
not work on Solaris). |
| Language: |
en-US |
| Citation: |
bigsnpr citation info |
| Materials: |
README NEWS |
| CRAN checks: |
bigsnpr results |