## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set(collapse = TRUE, comment = "#>") options(tibble.print_min = 4L, tibble.print_max = 4L) ## ----setup-------------------------------------------------------------------- library(ecocomDP) ## ----eval=FALSE--------------------------------------------------------------- # mypath <- paste0(tempdir(), "/dwca") # dir.create(mypath) # # convert_to_dwca( # path = mypath, # core_name = "event", # source_id = "edi.193.5", # derived_id = "edi.834.2", # user_id = "ecocomdp", # user_domain = "EDI") # #> Reading edi.193.5 # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> [0%] Downloaded 0 bytes... # #> # #> Validating edi.193.5: # #> Required tables # #> Column names # #> Required columns # #> Column classes # #> Datetime formats # #> Primary keys # #> Composite keys # #> Referential integrity # #> Latitude and longitude format # #> Latitude and longitude range # #> Elevation # #> # #> Creating DwC-A Event Core tables # #> Creating DwC-A Event Core EML # #> Reading EML of L1 data package edi.193.5 # #> Reading EML of L0 data package knb-lter-hfr.118.33 # #> Creating EML of L2 data package edi.834.2 # #> Updating: # #> # #> # #> # #> # #> # #> <pubDate> # #> <abstract> # #> <keywordSet> # #> <methods> # #> <dataTable> # #> <otherEntity> # #> <annotations> # #> </eml> # #> Writing EML # #> Validating EML # #> Validation passed :) # #> Done. # ## ----eval=FALSE--------------------------------------------------------------- # dir(mypath) # #> [1] "edi.834.2.xml" "event.csv" "extendedmeasurementorfact.csv" # #> [4] "meta.xml" "occurrence.csv"