Last updated on 2024-11-28 09:49:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 7.31 | 566.91 | 574.22 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 4.48 | 514.63 | 519.11 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 1188.73 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 1244.30 | OK | |||
| r-devel-windows-x86_64 | 0.4.0 | 8.00 | 434.00 | 442.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 5.06 | 536.06 | 541.12 | ERROR | |
| r-release-linux-x86_64 | 0.3.0 | 5.23 | 621.17 | 626.40 | OK | |
| r-release-macos-arm64 | 0.4.0 | 219.00 | NOTE | |||
| r-release-macos-x86_64 | 0.4.0 | 324.00 | NOTE | |||
| r-release-windows-x86_64 | 0.3.0 | 9.00 | 448.00 | 457.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.4.0 | 227.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.4.0 | 377.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.4.0 | 14.00 | 498.00 | 512.00 | NOTE |
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [429s/296s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 161 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (15): 'test-plotCharacteristics.R:2:3',
'test-plotCharacteristics.R:136:3', 'test-plotCohortOverlap.R:2:3',
'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:94:3',
'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:123:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1162:3',
'test-summariseCharacteristics.R:1392:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCohortTiming.R:51:3'): summariseCohortTiming ────────
omopgenerics::settings(timing1)$restrict_to_first_entry is not TRUE
`actual` is a character vector ('TRUE')
`expected` is a logical vector (TRUE)
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 161 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘summarise_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 76-83 [unnamed-chunk-5] (summarise_characteristics.Rmd)
Error: processing vignette 'summarise_characteristics.Rmd' failed with diagnostics:
argument "x" is missing, with no default
--- failed re-building ‘summarise_characteristics.Rmd’
--- re-building ‘summarise_cohort_overlap.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 79-80 [unnamed-chunk-4] (summarise_cohort_overlap.Rmd)
Error: processing vignette 'summarise_cohort_overlap.Rmd' failed with diagnostics:
unused argument (formatEstimateName = c(`N (%)` = "<count> (<percentage>%)"))
--- failed re-building ‘summarise_cohort_overlap.Rmd’
--- re-building ‘summarise_cohort_timing.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 81-87 [unnamed-chunk-5] (summarise_cohort_timing.Rmd)
Error: processing vignette 'summarise_cohort_timing.Rmd' failed with diagnostics:
argument "x" is missing, with no default
--- failed re-building ‘summarise_cohort_timing.Rmd’
--- re-building ‘summarise_large_scale_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise_large_scale_characteristics.Rmd’
SUMMARY: processing the following files failed:
‘summarise_characteristics.Rmd’ ‘summarise_cohort_overlap.Rmd’
‘summarise_cohort_timing.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [406s/279s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 161 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (15): 'test-plotCharacteristics.R:2:3',
'test-plotCharacteristics.R:136:3', 'test-plotCohortOverlap.R:2:3',
'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:94:3',
'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:123:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1162:3',
'test-summariseCharacteristics.R:1392:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCohortTiming.R:51:3'): summariseCohortTiming ────────
omopgenerics::settings(timing1)$restrict_to_first_entry is not TRUE
`actual` is a character vector ('TRUE')
`expected` is a logical vector (TRUE)
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 161 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.4.0
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 3.5Mb
help 1.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [225s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 161 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (15): 'test-plotCharacteristics.R:2:3',
'test-plotCharacteristics.R:136:3', 'test-plotCohortOverlap.R:2:3',
'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:94:3',
'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:123:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1162:3',
'test-summariseCharacteristics.R:1392:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCohortTiming.R:51:3'): summariseCohortTiming ────────
omopgenerics::settings(timing1)$restrict_to_first_entry is not TRUE
`actual` is a character vector ('TRUE')
`expected` is a logical vector (TRUE)
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 161 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64