Last updated on 2024-11-22 09:49:06 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-0 | 5.88 | 47.86 | 53.74 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-0 | 3.95 | 33.97 | 37.92 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-0 | 89.46 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-0 | 81.81 | OK | |||
| r-devel-windows-x86_64 | 1.0-0 | 6.00 | 77.00 | 83.00 | OK | |
| r-patched-linux-x86_64 | 1.0-0 | 5.30 | 45.42 | 50.72 | OK | |
| r-release-linux-x86_64 | 0.4-6 | 3.45 | 43.98 | 47.43 | ERROR | |
| r-release-macos-arm64 | 1.0-0 | 30.00 | OK | |||
| r-release-macos-x86_64 | 1.0-0 | 67.00 | OK | |||
| r-release-windows-x86_64 | 1.0-0 | 7.00 | 76.00 | 83.00 | OK | |
| r-oldrel-macos-arm64 | 1.0-0 | 32.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0-0 | 49.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0-0 | 8.00 | 76.00 | 84.00 | OK |
Version: 0.4-6
Check: Rd files
Result: NOTE
checkRd: (-1) plot-traj.Rd:71: Lost braces; missing escapes or markup?
71 | the plots are saved into directory {sim.dir}/predictions/migTrajectories.}
| ^
Flavor: r-release-linux-x86_64
Version: 0.4-6
Check: examples
Result: ERROR
Running examples in ‘bayesMig-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mig.predict
> ### Title: Generate posterior trajectories of net migration rates
> ### Aliases: mig.predict bayesMig.prediction
>
> ### ** Examples
>
> # Toy simulation for US states
> us.mig.file <- file.path(find.package("bayesMig"), "extdata", "USmigrates.txt")
> sim.dir <- tempfile()
> m <- run.mig.mcmc(nr.chains = 2, iter = 30, thin = 1, my.mig.file = us.mig.file,
+ output.dir = sim.dir, present.year = 2017, annual = TRUE)
Starting Bayesian Hierarchical Model Migration.
========================================================
Initialize simulation - 2 chain(s) in total.
Chain nr. 1
************
Starting values:
mu a
-0.1 1.1
Store initial values into mc1
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:30 2024
Iteration: 20 -- Sat Nov 9 20:17:30 2024
Iteration: 30 -- Sat Nov 9 20:17:30 2024
Flushing results into disk.
Chain nr. 2
************
Starting values:
mu a
0.1 5.0
Store initial values into mc2
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:30 2024
Iteration: 20 -- Sat Nov 9 20:17:30 2024
Iteration: 30 -- Sat Nov 9 20:17:31 2024
Flushing results into disk.
Results stored in /home/hornik/tmp/scratch/Rtmp0NrDpk/file3705eb2788689
Simulation successfully finished!!!
>
> # Prediction
> pred <- mig.predict(sim.dir = sim.dir, burnin = 5, end.year = 2050)
Loading chain 1 from disk. (mcmc.list[[ 1 ]]).
Loading chain 2 from disk. (mcmc.list[[ 2 ]]).
Prediction from 2018 until 2050 (i.e. 33 projections)
Storing thinned mcmc:
Storing country-independent parameters ...done.
Storing country-specific parameters ...done.
Migration projection trajectory 1
Migration projection trajectory 2
Migration projection trajectory 3
Migration projection trajectory 4
Migration projection trajectory 5
Migration projection trajectory 6
Migration projection trajectory 7
Migration projection trajectory 8
Migration projection trajectory 9
Migration projection trajectory 10
Migration projection trajectory 11
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Migration projection trajectory 30
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Migration projection trajectory 33
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Migration projection trajectory 40
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Migration projection trajectory 43
Migration projection trajectory 44
Migration projection trajectory 45
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Migration projection trajectory 47
Migration projection trajectory 48
Migration projection trajectory 49
Migration projection trajectory 50
Creating summary files ...
Error in cbind(this.result1, proj.result) :
number of rows of matrices must match (see arg 2)
Calls: mig.predict ... mig.write.projection.summary -> <Anonymous> -> cbind
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4-6
Check: tests
Result: ERROR
Running ‘run_tests.R’ [4s/4s]
Running ‘test_functions.R’ [0s/0s]
Running the tests in ‘tests/run_tests.R’ failed.
Complete output:
> library(bayesMig)
Loading required package: bayesTFR
> source('test_functions.R')
>
> #options(error=quote(dump.frames("last.dump", TRUE)))
>
> cran <- TRUE
>
> test.run.annual.simulation()
<=== Starting test of running annual migration MCMC for US states ====
Starting Bayesian Hierarchical Model Migration.
========================================================
Initialize simulation - 2 chain(s) in total.
Chain nr. 1
************
Starting values:
mu a
-0.1 1.1
Store initial values into mc1
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:35 2024
Iteration: 20 -- Sat Nov 9 20:17:35 2024
Iteration: 30 -- Sat Nov 9 20:17:35 2024
Flushing results into disk.
Chain nr. 2
************
Starting values:
mu a
0.1 5.0
Store initial values into mc2
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:36 2024
Iteration: 20 -- Sat Nov 9 20:17:36 2024
Iteration: 30 -- Sat Nov 9 20:17:36 2024
Flushing results into disk.
Results stored in /home/hornik/tmp/scratch/Rtmp42cNFK/file370d0145706b44
Simulation successfully finished!!!
==== Test of running annual migration MCMC for US states OK.===>
<=== Starting test of running annual projections ====
Loading chain 1 from disk. (mcmc.list[[ 1 ]]).
Loading chain 2 from disk. (mcmc.list[[ 2 ]]).
Prediction from 2018 until 2050 (i.e. 33 projections)
Storing thinned mcmc:
Storing country-independent parameters ...done.
Storing country-specific parameters ...done.
Migration projection trajectory 1
Migration projection trajectory 2
Migration projection trajectory 3
Migration projection trajectory 4
Migration projection trajectory 5
Migration projection trajectory 6
Migration projection trajectory 7
Migration projection trajectory 8
Migration projection trajectory 9
Migration projection trajectory 10
Migration projection trajectory 11
Migration projection trajectory 12
Migration projection trajectory 13
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Migration projection trajectory 27
Migration projection trajectory 28
Migration projection trajectory 29
Migration projection trajectory 30
Migration projection trajectory 31
Migration projection trajectory 32
Migration projection trajectory 33
Migration projection trajectory 34
Migration projection trajectory 35
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Migration projection trajectory 37
Migration projection trajectory 38
Migration projection trajectory 39
Migration projection trajectory 40
Creating summary files ...
Error in cbind(this.result1, proj.result) :
number of rows of matrices must match (see arg 2)
Calls: test.run.annual.simulation ... mig.write.projection.summary -> <Anonymous> -> cbind
Execution halted
Flavor: r-release-linux-x86_64