Last updated on 2024-11-22 09:49:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.5 | 11.13 | 120.23 | 131.36 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.5 | 9.07 | 87.15 | 96.22 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.5 | 211.34 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.5 | 207.41 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.5 | 13.00 | 126.00 | 139.00 | OK | |
| r-patched-linux-x86_64 | 0.1.5 | 11.08 | 114.35 | 125.43 | OK | |
| r-release-linux-x86_64 | 0.1.5 | 11.42 | 113.56 | 124.98 | OK | |
| r-release-macos-arm64 | 0.1.5 | 68.00 | OK | |||
| r-release-macos-x86_64 | 0.1.5 | 124.00 | OK | |||
| r-release-windows-x86_64 | 0.1.5 | 15.00 | 124.00 | 139.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.5 | 79.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.5 | 133.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.5 | 17.00 | 158.00 | 175.00 | OK |
Version: 0.1.5
Check: examples
Result: ERROR
Running examples in ‘orthGS-Ex.R’ failed
The error most likely occurred in:
> ### Name: gapless_msa
> ### Title: Remove Gaps in a MSA
> ### Aliases: gapless_msa
>
> ### ** Examples
>
> gapless_msa(msa(sequences = c("APGW", "AGWC", "CWGA"),ids = c("a", "b", "c"))$ali)
Error in msa(sequences = c("APGW", "AGWC", "CWGA"), ids = c("a", "b", :
You must install the package muscle in order to use this function
Calls: gapless_msa -> as.matrix -> msa
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Searching_for_Orthologous.Rmd’ using rmarkdown
Quitting from lines 56-61 [unnamed-chunk-5] (Searching_for_Orthologous.Rmd)
Error: processing vignette 'Searching_for_Orthologous.Rmd' failed with diagnostics:
You must install the package muscle in order to use this function
--- failed re-building ‘Searching_for_Orthologous.Rmd’
--- re-building ‘Unraveling_the_hiden_paralogous.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/orthGS.Rcheck/vign_test/orthGS/vignettes/Unraveling_the_hiden_paralogous_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19334 bytes
Input file size = 19436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15210
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15210
Output IDAT size = 15210 bytes (4124 bytes decrease)
Output file size = 15288 bytes (4148 bytes = 21.34% decrease)
--- finished re-building ‘Unraveling_the_hiden_paralogous.Rmd’
SUMMARY: processing the following file failed:
‘Searching_for_Orthologous.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Searching_for_Orthologous.Rmd’ using rmarkdown
Quitting from lines 56-61 [unnamed-chunk-5] (Searching_for_Orthologous.Rmd)
Error: processing vignette 'Searching_for_Orthologous.Rmd' failed with diagnostics:
You must install the package muscle in order to use this function
--- failed re-building ‘Searching_for_Orthologous.Rmd’
--- re-building ‘Unraveling_the_hiden_paralogous.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/orthGS.Rcheck/vign_test/orthGS/vignettes/Unraveling_the_hiden_paralogous_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19299 bytes
Input file size = 19401 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15354
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15354
Output IDAT size = 15354 bytes (3945 bytes decrease)
Output file size = 15432 bytes (3969 bytes = 20.46% decrease)
--- finished re-building ‘Unraveling_the_hiden_paralogous.Rmd’
SUMMARY: processing the following file failed:
‘Searching_for_Orthologous.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc