CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use
Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
| Version: | 3.3.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | checkmate (≥ 2.0.0), DBI (≥ 1.1.0), dplyr (≥ 1.1.0), magrittr (≥ 2.0.0), omopgenerics (≥ 0.2.2), rlang (≥ 1.0.0), glue (≥ 1.5.0), stringr (≥ 1.4.0), tidyselect (≥ 1.2.0), tidyr (≥ 1.2.0), cli (≥ 3.1.0), purrr, lubridate, PatientProfiles (≥ 1.1.0), vctrs, visOmopResults (≥ 0.3.0), RJSONIO |
| Suggests: | covr, duckdb, CDMConnector (≥ 1.3.0), knitr, rmarkdown, testthat (≥ 3.0.0), RPostgres, odbc, spelling, tibble, gt, flextable |
| Published: | 2024-11-10 |
| DOI: | 10.32614/CRAN.package.CodelistGenerator |
| Author: | Edward Burn  [aut,
cre],
Marti Catala
[ctb],
Xihang Chen [aut],
Nuria Mercade-Besora
[aut],
Mike Du [ctb],
Danielle Newby
[ctb] |
| Maintainer: | Edward Burn <edward.burn at ndorms.ox.ac.uk> |
| License: | Apache License (≥ 2) |
| URL: | https://darwin-eu.github.io/CodelistGenerator/ |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | CodelistGenerator results [issues need fixing before 2024-12-15] |
Documentation:
| Reference manual: | CodelistGenerator.pdf |
| Vignettes: |
01_Introduction_to_CodelistGenerator (source, R code) a02_Candidate_codes_OA (source, R code) 03_Options_for_CodelistGenerator (source, R code) a04_vocab_based_codelists (source, R code) |
Downloads:
| Package source: | CodelistGenerator_3.3.0.tar.gz |
| Windows binaries: | r-devel: CodelistGenerator_3.3.0.zip, r-release: CodelistGenerator_3.3.0.zip, r-oldrel: CodelistGenerator_3.3.0.zip |
| macOS binaries: | r-release (arm64): CodelistGenerator_3.3.0.tgz, r-oldrel (arm64): CodelistGenerator_3.3.0.tgz, r-release (x86_64): CodelistGenerator_3.3.0.tgz, r-oldrel (x86_64): CodelistGenerator_3.3.0.tgz |
| Old sources: | CodelistGenerator archive |
Reverse dependencies:
| Reverse imports: | CohortSymmetry, DrugUtilisation |
| Reverse suggests: | CohortCharacteristics, CohortConstructor, CohortSurvival, OmopSketch, PatientProfiles |
Linking:
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