## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, eval = FALSE, comment = "#>" ) ## ----install------------------------------------------------------------------ # install.packages("pak") # pak::pak("ohdsi/ROhdsiWebApi") ## ----load--------------------------------------------------------------------- # library(allofus) # library(ROhdsiWebApi) ## ----ohdsiweb----------------------------------------------------------------- # cd <- ROhdsiWebApi::getCohortDefinition(1788061, "https://atlas-demo.ohdsi.org/WebAPI") # cd_sql <- ROhdsiWebApi::getCohortSql(cd, "https://atlas-demo.ohdsi.org/WebAPI") ## ----cohort------------------------------------------------------------------- # cohort <- aou_atlas_cohort( # cohort_definition = cd, # cohort_sql = cd_sql # ) ## ----------------------------------------------------------------------------- # head(cohort) ## ----------------------------------------------------------------------------- # dplyr::tbl(con, "person") %>% # dplyr::filter(person_id %in% !!cohort$person_id)